Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00214X
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 1.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 1.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 1.7
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 25 2.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 3.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 3.9
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 24 5.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.8
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 23 9.0
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 23 9.0
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 23 9.0
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 1.3
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 204 SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARIVVF 31
S + +Q+ K KP L TES+ + +R E++ ++ + ARL + + ++
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSELLQK 1184
Query: 30 RRTL 19
+R L
Sbjct: 1185 KRLL 1188
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 179 SDCMDKSRLRQSTVHSNEIGERQRSRAPDMRAPGE 283
SD + K +L + + +++ +RSR D+R P E
Sbjct: 332 SDNLPKPQLLKRPIDDSDVRISKRSRGRDLRTPSE 366
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 169 QTKTFPLNISN*VQIQTPPHSVRDS 95
Q +FPL N Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 2.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 192 IKADCASLPFIPTRLGSVKEVAHRI*EPRVSWS*RG 299
+ AD A + + + G KEVA RI E +V W RG
Sbjct: 42 LNAD-AHVIVVSPKAGLCKEVAWRIQEKQVEWRDRG 76
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 3.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 287 PAHPGLSYPVRDFFDAPQSRWNER*TGAVGFYPYSH*NYTNKNLS 153
P+ P + + + FD+ + +N TG Y + +YT N S
Sbjct: 314 PSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTS 358
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 312 TPSRTLARTSSPGALISGARLL*RSPIS 229
+P+R+ ART SP L S L +SP+S
Sbjct: 215 SPTRSPARTPSPIRLYSSDALRPQSPLS 242
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 24.2 bits (50), Expect = 5.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 83 FRIKTISYAVRWCLYLDSV 139
F I +++ A RWC +LD++
Sbjct: 351 FYIPSLNPAPRWCSFLDNI 369
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 59 LDKRATFVFRIKTISYAVRWCLYLDSVGNVK 151
L+ FVF + T+ Y C YLD +K
Sbjct: 2492 LENITGFVFTVPTMEYRNEVCSYLDLAMKLK 2522
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 59 LDKRATFVFRIKTISYAVRWCLYLDSVGNVKRKGFCLYS 175
L KR F +T++Y C++ + +G CL++
Sbjct: 242 LQKREDLYFSSRTLAYVFGGCMHSLETIEGEEEGECLFN 280
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -2
Query: 99 IVLIRNTNVARLSNYQNARIVVFRRTLVYG 10
I +++ ++A + NY++ + RR++ YG
Sbjct: 216 IRILKRNSIATIGNYRSPSALEKRRSISYG 245
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 107 AVRWCLYLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGERQRSRAPDM 268
A+ + L D+ R+G +FSD K++ SN++ + +A D+
Sbjct: 214 AIEYILEKDNAKGQYREGEAYEAFSDSSAKTQFSDFQALSNQLKSQLFEKANDL 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,221
Number of Sequences: 5004
Number of extensions: 28758
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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