Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00214X
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0721 - 20931241-20931669 29 0.67
01_05_0503 - 22779025-22779397,22779602-22779627 28 2.0
03_05_0819 + 27948797-27948956,27948976-27949202 27 2.7
02_02_0495 + 10954305-10954349,10954660-10955079 27 3.6
03_01_0334 - 2634192-2634460,2634571-2634760,2634857-2636071 27 4.7
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 27 4.7
11_06_0701 + 26407055-26407597,26407794-26409644 26 6.2
11_02_0076 - 8059267-8059387,8059406-8059857 26 6.2
04_03_1022 - 21778315-21779007 26 6.2
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 26 6.2
11_06_0207 + 21214631-21216121 26 8.3
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 26 8.3
01_03_0221 - 13916129-13916504,13917183-13917217 26 8.3
>07_03_0721 - 20931241-20931669
Length = 142
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 229 RDWGASKKSRTGYESPG*AGPSEGPRWG 312
R GA + E+PG AG EGPRWG
Sbjct: 114 RPAGARSRRERRLEAPG-AGEREGPRWG 140
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 174 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 58
LYK + ++L + E+K+R+ TA IR + LSN
Sbjct: 42 LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 330 AHSGGGTPSRT--LARTSSPGALISGA 256
A GGG+PSRT LART++P A S +
Sbjct: 18 AAGGGGSPSRTPRLARTAAPFASSSSS 44
>02_02_0495 + 10954305-10954349,10954660-10955079
Length = 154
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 262 RCATSLTLPNLVGMNGRLAQSAFIHTVTK 176
RC +L P+L GM G +A ++TVT+
Sbjct: 33 RCTINLAKPSLRGMQGGDKTTATVNTVTR 61
>03_01_0334 - 2634192-2634460,2634571-2634760,2634857-2636071
Length = 557
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 182 DCMDKSRLRQSTVHSNEIGERQRSRAPDMRAPGELVLARVR 304
DC+ + +R ++V S E RSR+ + A +L + +R
Sbjct: 251 DCISEPIIRSNSVRSTSANENLRSRSVNSEADIQLAIKSLR 291
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 329 HTAAVAPHRGPSLGPAHPGLSYPVRDFFDAPQSRWNE 219
HTAA A GP+LG P P + F A ++E
Sbjct: 69 HTAAAAAAAGPALGLTKPNAVEPPQVSFAAKDVEFSE 105
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 148 NISN*VQIQTPPHSVRDSLNTKYERCSF 65
N+ N ++ TPPH++RD + + C F
Sbjct: 603 NVENIFEMLTPPHNLRDLVIGYFFGCRF 630
>11_02_0076 - 8059267-8059387,8059406-8059857
Length = 190
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 262 GYESPG*AGPSEGPRWGATAAVC 330
G SP G S PRW AT+ C
Sbjct: 119 GARSPTRHGSSSSPRWRATSGYC 141
>04_03_1022 - 21778315-21779007
Length = 230
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 329 HTAAVAPHRGPSLGPAHPGLSYP 261
HT A AP GP + P HP +P
Sbjct: 73 HTPAPAPAPGPYIPPHHPHHHHP 95
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 260 PDMRAPGELVLARVRDG 310
PD+ APG +LA V+DG
Sbjct: 444 PDVAAPGSNILAAVKDG 460
>11_06_0207 + 21214631-21216121
Length = 496
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 210 WRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIV 94
WRS S++ + YKQ+ L + TES Y +V
Sbjct: 86 WRSAYTSLRDMGQYKQQTPCLLYTTESSGEKVSCLYSLV 124
>02_05_1130 -
34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +2
Query: 119 CLYLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGERQRSRAPDMRAPGELVLAR 298
CL ++ ++KR G LYS + + + R P PG++V+
Sbjct: 380 CLDIEEPADIKRDGINLYSTVSVSYIEAILGTVKKVRTVDGNSELRIPPGTQPGDVVVL- 438
Query: 299 VRDGVP 316
+ GVP
Sbjct: 439 AKQGVP 444
>01_03_0221 - 13916129-13916504,13917183-13917217
Length = 136
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 190 G*KPTAPVYRSFQRDWGASKKSRTGYESPG*AGPSEG 300
G + T+PV + DW A+ R G S G G +G
Sbjct: 83 GHRSTSPVRTPRRSDWAAATARRGGAASGGVCGEEKG 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,140,168
Number of Sequences: 37544
Number of extensions: 190995
Number of successful extensions: 491
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -