Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00214X
         (331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.92 
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)                   28   1.6  
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)                      28   2.1  
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6)             27   3.7  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_10555| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           27   4.9  
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                26   6.5  
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)          26   6.5  
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       26   6.5  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         26   6.5  
SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40)               26   6.5  
SB_12346| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      26   6.5  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               26   8.5  

>SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 304 ADPR*DQLTRGSHIRCATSLTLPNLVGMN 218
           A P+  + TRG   R + S+T+PN  G+N
Sbjct: 104 ASPQPAKFTRGRRFRSSGSITIPNAPGLN 132


>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
          Length = 634

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 TAPVYRSFQRDWGASKKSRTGYESPG*AGPSEGPRWG 312
           T   YR F+ DW   +++R  + S   + P    +WG
Sbjct: 130 TRDFYREFEEDWCRERRARMDWRSMLSSCPGRARQWG 166


>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
          Length = 556

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 311 PHRGPSLGPAHPGLSYPVRDFFDAPQSRWN 222
           P + P+L PA+P   +    FF AP+  WN
Sbjct: 48  PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 77


>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 311 PHRGPSLGPAHPGLSYPVRDFFDAPQSRWN 222
           P + P+L PA+P   +    FF AP+  WN
Sbjct: 265 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 294


>SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6)
          Length = 153

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 173 SFSDCMDKSRLRQSTVHSNEIGERQRSRAPDMRAPGE 283
           SFS     +R RQ+  H   +G   +S   D+  PGE
Sbjct: 45  SFSSLTSLARKRQNRTHDFSLGVAAKSEKVDLIFPGE 81


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 220 SFQRDWGA-SKKSRTGYESPG*AGPSEGPRW 309
           + ++DW   +K    GY   G  GP E P W
Sbjct: 768 NIKKDWAEYNKTGERGYRLAGGRGPRENPPW 798


>SB_10555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 215 TVHSNEIGERQRSRAPDMRAPGELVLARVRDGVPPP 322
           ++HS  + + + S  P     GE VL+ V+D + PP
Sbjct: 1   SIHSQVLSKVKDSMDPPGYTTGEQVLSMVKDSMDPP 36


>SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +3

Query: 120 VCIWTQ---LEMLSGKVFV--CIVLVTVWIKADCASLPFIP 227
           VC+W Q   L M +  VFV  C   + +W++  C S+  +P
Sbjct: 127 VCLWVQYLCLTMGAVPVFVYGCSTCICLWVQYLCLSMGAVP 167


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 62  DKRATFVFRIKTISYAVRWCLYLDS-VGNVKRKGFCLYSF-SDCMDKSRLRQS-TVHSNE 232
           D+  T +   KT    V   + + S VGN  R+    +++ +D +   R R    + +N+
Sbjct: 47  DRHRTKLISSKTCHSKVNLLILVSSYVGNAARRKEIRFTWGTDFLPSPRWRTVFLIGAND 106

Query: 233 IGERQRSRAPDMRAPGELVLARVRDG 310
             E  R  A + R  G+L+ +  R+G
Sbjct: 107 NQEEMRLMAAEDRLYGDLITSEYREG 132


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 62  DKRATFVFRIKTISYAVRWCLYLDS-VGNVKRKGFCLYSF-SDCMDKSRLRQS-TVHSNE 232
           D+  T +   KT    V   + + S VGN  R+    +++ +D +   R R    + +N+
Sbjct: 51  DRHRTKLISSKTCHSKVNLLILVSSYVGNAARRKEIRFTWGTDFLPTPRWRTVFLIGAND 110

Query: 233 IGERQRSRAPDMRAPGELVLARVRDG 310
             E  R  A + R  G+L+ +  R+G
Sbjct: 111 NQEEMRLMAAEDRLYGDLITSEYREG 136


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 159 PFRLTFPTESKYRHHRTAYEIVLIR 85
           PF +T P+ES  RH   A  +VL R
Sbjct: 773 PFTVTVPSESTCRHASLALAVVLQR 797


>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
          Length = 383

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 62  DKRATFVFRIKTISYAVRWCLYLDS-VGNVKRKGFCLYSF-SDCMDKSRLRQS-TVHSNE 232
           D+  T +   KT    V   + + S VGN  R+    +++ +D +   R R    + +N+
Sbjct: 122 DRHRTKLISSKTCHSKVNLLILVSSYVGNAARRKEIRFTWGTDFLPSLRWRTVFLIGAND 181

Query: 233 IGERQRSRAPDMRAPGELVLARVRDG 310
             E  R  A + R  G+L+ +  R+G
Sbjct: 182 NQEEMRLMAAEDRLYGDLITSEYREG 207


>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 179 SDCMDKSRLRQSTVHSNEIGERQRSRAPDMRAPGELVLARVRD 307
           SD   K    +S  HS+    R +SR PD   P +    R RD
Sbjct: 250 SDSRPKRSRSRSRDHSSRRNSRDKSRDPDRDRPRDSERDRYRD 292


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 323 AAVAPHRGPSLGPAHPG 273
           A  AP   PSLGP HPG
Sbjct: 374 ATTAPVITPSLGPPHPG 390


>SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40)
          Length = 230

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 216 VDWRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSNY 55
           VDW  +   ++S+ L+ +           + RH    Y++ L+R    A+ +NY
Sbjct: 41  VDWFEQSRRVRSIHLHPRYQEATITVEGHRARHVPPDYDVALLRLATPAKFTNY 94


>SB_12346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -2

Query: 234 ISLE*TVDWRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSNY 55
           +S   +V + SRLLS+ S+ L +QK  ++    E+  R          + N N+ R++++
Sbjct: 86  LSFPRSVVFVSRLLSVSSITLTRQKEKKVAQDIEAWGRDLAPYGAHSRVLNRNICRVNHH 145

Query: 54  QN 49
           Q+
Sbjct: 146 QS 147


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 111  CGGVCIWTQLEMLSGKVFV----CIVLVTVWIKADCASLPF 221
            CG    W  +++    + V    C++ VTV  +A+CA+ P+
Sbjct: 2125 CGAHIHWNCMKLFDSSIAVAYRKCLLPVTVEPRANCANTPY 2165


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 90  LRLSRTLCGGVCIWTQLEMLSGKVFVCIVLVTVWIKADCASLPFI 224
           +R+SRT+       T + M     F    LV  W+  DC  L F+
Sbjct: 40  VRISRTISQ-----TYVHMFESGYFRLAFLVLAWVNIDCCPLTFL 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,614,917
Number of Sequences: 59808
Number of extensions: 226173
Number of successful extensions: 527
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)