Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00211
         (832 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5; Endoptery...    76   1e-12
UniRef50_Q8BZN1 Cluster: Adult male diencephalon cDNA, RIKEN ful...    38   0.31 
UniRef50_Q4X408 Cluster: Putative uncharacterized protein; n=1; ...    35   2.9  
UniRef50_A0FKL7 Cluster: Putative O-antigen polymerase; n=7; Esc...    34   3.8  
UniRef50_UPI0000DB0DA3 Cluster: hypothetical protein RbelO_01000...    34   5.0  
UniRef50_Q8I3A6 Cluster: Putative uncharacterized protein PFI021...    34   5.0  
UniRef50_Q7N5U6 Cluster: Similar to putative phage protein; n=1;...    33   8.8  

>UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5;
           Endopterygota|Rep: Ornithine decarboxylase - Bombyx mori
           (Silk moth)
          Length = 444

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 33/46 (71%), Positives = 34/46 (73%)
 Frame = +3

Query: 3   GLWTGGLREAWPPLDEECRAAPEXXXXXXXXXXXXHRAVFVECALK 140
           GLWTGGLREAWPPLDEECRAAP+            HRAVFVECALK
Sbjct: 399 GLWTGGLREAWPPLDEECRAAPDLTPDLTSDLTPTHRAVFVECALK 444


>UniRef50_Q8BZN1 Cluster: Adult male diencephalon cDNA, RIKEN
           full-length enriched library, clone:9330155M09
           product:hypothetical Tyrosine-rich region containing
           protein, full insert sequence; n=3; Eukaryota|Rep: Adult
           male diencephalon cDNA, RIKEN full-length enriched
           library, clone:9330155M09 product:hypothetical
           Tyrosine-rich region containing protein, full insert
           sequence - Mus musculus (Mouse)
          Length = 158

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
 Frame = +2

Query: 278 MNYISKDEQLMS*NLTVYVNFCVYLFY---FQLNLFVSLFYIIIYLN--SS*DLSCVVNV 442
           ++Y+      +S  L++Y++  +YL Y   F+ NLF+S++++ IYL+   S  LS  +++
Sbjct: 13  LSYVYLSSIYLSIYLSIYLSIYLYLLYVCLFRYNLFLSIYHVSIYLSIYLSIYLSIYLSI 72

Query: 443 YII*SCVKFLEI 478
           +I   CV +L+I
Sbjct: 73  FIYFMCV-YLDI 83


>UniRef50_Q4X408 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 63

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 326 VYVNFCVYLFYFQLNLFVSLF---YIIIYLNSS*DLSCVVNVYI 448
           +Y N C Y+ Y   NLF + +   +II Y+N+   L  + NVYI
Sbjct: 11  LYFNKCYYMQYCHFNLFKNYYKSHFIIFYINNKMYLCSIYNVYI 54


>UniRef50_A0FKL7 Cluster: Putative O-antigen polymerase; n=7;
           Escherichia coli|Rep: Putative O-antigen polymerase -
           Escherichia coli
          Length = 382

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
 Frame = +1

Query: 301 TVDVIKLNSVCKFLCVFILFSIKFVCFIV-LYNNISKLKLRSFMCSKRVYYIELC*IS*N 477
           T+ +I   +V  F+ + +      V F++ LY+ IS L   SF+ +K  YY+    +  N
Sbjct: 177 TIFLISFRNVTTFIIITVSSITSIVVFMIALYSAISSLAAMSFVFAKIDYYLHQNPVVLN 236

Query: 478 HHHLNI-GLWSRIIYLTFRNEAEIINKYKQYKQNIKVKA*VMDLLCIFYLVCGTI--IAT 648
              LNI      + Y+ +RN  +     +Q   NI +   ++ +  + +L  GTI  +A 
Sbjct: 237 FGGLNILDALFILFYMRYRNAID-----RQI--NINILTRIIFVGSVIHLFSGTITFLAR 289

Query: 649 VC 654
           VC
Sbjct: 290 VC 291


>UniRef50_UPI0000DB0DA3 Cluster: hypothetical protein
           RbelO_01000104; n=1; Rickettsia bellii OSU 85-389|Rep:
           hypothetical protein RbelO_01000104 - Rickettsia bellii
           OSU 85-389
          Length = 566

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 21/79 (26%), Positives = 44/79 (55%)
 Frame = +2

Query: 329 YVNFCVYLFYFQLNLFVSLFYIIIYLNSS*DLSCVVNVYII*SCVKFLEITII*TLVCGL 508
           Y++F  Y  +FQ  L +   + +I+      +S ++++Y++ + +  L+ITI  +   G+
Sbjct: 27  YISFVGYSSFFQRVLQIEFAHALIF-----SISSILSIYLVAAFLFCLDITIYISFTLGV 81

Query: 509 ELFI*HFAMKLKS*INTSN 565
            LF+ +F   LK   +TS+
Sbjct: 82  ILFLYYFFNFLKQKESTSS 100


>UniRef50_Q8I3A6 Cluster: Putative uncharacterized protein PFI0210c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0210c - Plasmodium falciparum
           (isolate 3D7)
          Length = 2454

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 331 CKFLCVFILFSIKFVCFIVLYNNISKLKLRSFMCSKRVYYIELC*IS*NHHHLNIGLWSR 510
           C      +LF   F+C++ + N I  + + S +C+  +Y++ +     NH         +
Sbjct: 690 CLIYTTILLFYYTFLCYVHIKNFIKIITIISILCNITIYFVFILFFLINHTIKKYNFSKK 749

Query: 511 IIYL 522
           IIY+
Sbjct: 750 IIYI 753


>UniRef50_Q7N5U6 Cluster: Similar to putative phage protein; n=1;
           Photorhabdus luminescens subsp. laumondii|Rep: Similar
           to putative phage protein - Photorhabdus luminescens
           subsp. laumondii
          Length = 361

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 807 KFNTRTYKAINCKIKMFFINKALHLSQ*TCDIYR 706
           K+NT TY+ IN KIK  F+ +  HLS    +I R
Sbjct: 271 KWNTLTYRKINKKIKQLFLRRIGHLSAFDMNIMR 304


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,745,710
Number of Sequences: 1657284
Number of extensions: 11939106
Number of successful extensions: 31483
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31432
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)