Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00211
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.5  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   7.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   7.5  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   10.0 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   10.0 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   10.0 

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 645 CNYCSANQVENAQ*VHYLCF 586
           C YC +NQ E +  +HYLC+
Sbjct: 243 CPYCQSNQTETS--LHYLCW 260


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 320 LTVYVNFCVYLFYFQLNLFVSLFYIIIYLNSS 415
           L  ++  C YL   +LN F SLF II  LNSS
Sbjct: 734 LAYFIQVCDYLR--ELNNFASLFSIISALNSS 763


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -3

Query: 422 DLNLSLDILL---YKTMKQTNLIENKINTHK 339
           ++N +LD+LL   Y     TNL+E K+  HK
Sbjct: 171 NVNKTLDVLLIRGYSADGSTNLVELKLTPHK 201


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 441 CILYRVVLNFLKSPSFK 491
           C +Y+V  ++L SPSFK
Sbjct: 298 CFIYKVAYDYLISPSFK 314


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 147 ARVPPDLDLRIFSIISVYVFIHVV 218
           +++PP + + IFS+ISV + + +V
Sbjct: 27  SKLPPKVSVPIFSLISVNIVVWIV 50


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 598 MDLLCIFYLVCGTIIATVCMVLKK 669
           +D  CI +L CGT +AT  ++ +K
Sbjct: 66  LDTSCINHLRCGTTVATNALLERK 89


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 352 ILFSIKFVCFIVLYNNISKLKLRSFM 429
           I+F+  F CF +  + ++KL L +F+
Sbjct: 70  IIFACTFKCFTMTEDGLTKLNLEAFL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,858
Number of Sequences: 5004
Number of extensions: 55678
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)