Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00211
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.28 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -1

Query: 778 KLQNKNVFYKQSATL-----VAVNV*YI*IFNLMVIDCQYRISLEP 656
           KL  KN+ Y +SA L     V +NV +  ++  ++I+CQ  ++  P
Sbjct: 677 KLDLKNMKYTRSADLSSYNCVPINVQFSVLYGFVIIECQEPVTNRP 722


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVL 663
           K  A V+D +C+      TIIAT+ ++L
Sbjct: 520 KFAAMVIDRMCLIIFTLFTIIATIAVLL 547


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 426 KFAAMVVDRLCLIVFTLFTVLATIVILCR 454


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 426 KFAAMVVDRLCLIVFTLFTVLATIVILCR 454


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 426 KFAAMVVDRLCLIVFTLFTVLATIVILCR 454


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 426 KFAAMVVDRLCLIVFTLFTVLATIVILCR 454


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 426 KFAAMVVDRLCLIVFTLFTVLATIVILCR 454


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 426 KFAAMVVDRLCLIVFTLFTVLATIVILCR 454


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 494 KFAAMVVDRLCLIVFTLFTVLATIVILCR 522


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 KVKA*VMDLLCIFYLVCGTIIATVCMVLK 666
           K  A V+D LC+      T++AT+ ++ +
Sbjct: 494 KFAAMVVDRLCLIVFTLFTVLATIVILCR 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,034
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)