Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00210X
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   100   1e-22
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   100   1e-22
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    28   0.69 
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   2.8  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    26   2.8  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   3.7  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    25   8.5  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  100 bits (240), Expect = 1e-22
 Identities = 50/80 (62%), Positives = 57/80 (71%)
 Frame = +3

Query: 15  QTERSFQKQPTVFLNRKRGIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCPFTGN 194
           Q+ER+FQKQP +F N K+G G        R++KDVGLGFKTP EAI G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 195 VSIRCRILTGVVQKMKMQRT 254
           VSIR RILTG V   KM RT
Sbjct: 61  VSIRGRILTGTVVSTKMHRT 80



 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 37/55 (67%), Positives = 50/55 (90%)
 Frame = +2

Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
           +IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFN
Sbjct: 82  IIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFN 135


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  100 bits (240), Expect = 1e-22
 Identities = 50/80 (62%), Positives = 57/80 (71%)
 Frame = +3

Query: 15  QTERSFQKQPTVFLNRKRGIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCPFTGN 194
           Q+ER+FQKQP +F N K+G G        R++KDVGLGFKTP EAI G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 195 VSIRCRILTGVVQKMKMQRT 254
           VSIR RILTG V   KM RT
Sbjct: 61  VSIRGRILTGTVVSTKMHRT 80



 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 37/55 (67%), Positives = 50/55 (90%)
 Frame = +2

Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
           +IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFN
Sbjct: 82  IIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFN 135


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 362 IGDIVTIGECRPLSKTVRF 418
           +GD VTI  CRP S T RF
Sbjct: 51  VGDAVTIQPCRPRSATKRF 69


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 133 LKPRPTSLWYLNGFLLRFTP 74
           L P+PT+ W  NGF  + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 179 SLHW*RFDPLPH 214
           SLHW  F+PLPH
Sbjct: 202 SLHWVGFEPLPH 213


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 209 PHPHRRRSENEDAENFVIRRDYLHYLPKYNRFEKR 313
           P P          E F  + DY  +LPK   FEK+
Sbjct: 129 PSPKLANQSTLPTELFQSQNDYSRFLPKRKDFEKK 163


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 230 SENEDAENFVIRRDYLHYLPKY--NRFEKRH 316
           SE E  E F+   D +HY P+Y  + +E RH
Sbjct: 13  SERERLEPFI---DQIHYSPRYADDEYEYRH 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,330
Number of Sequences: 5004
Number of extensions: 38826
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)