Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00210X
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 106 1e-23
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 106 1e-23
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 106 1e-23
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 106 1e-23
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 103 8e-23
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 86 1e-17
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 33 0.099
08_02_0383 - 16539472-16539633,16543044-16543205 33 0.17
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.30
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 31 0.53
04_01_0301 + 4016588-4016627,4016715-4018837 27 8.6
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 106 bits (254), Expect = 1e-23
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MADQTERSFQKQPTVFLNRKR-GIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
MA+QTE++F KQP VFL+ K+ G G K + R+ K +GLGFKTPREAI GTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
FTG VSIR RI+ G KM RT
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRT 84
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 9/64 (14%)
Frame = +2
Query: 257 VIRRDYLHYLPKYNR---------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 409
++RR+YLH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKT
Sbjct: 86 IVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKT 144
Query: 410 VRFN 421
VRFN
Sbjct: 145 VRFN 148
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 106 bits (254), Expect = 1e-23
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MADQTERSFQKQPTVFLNRKR-GIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
MA+QTE++F KQP VFL+ K+ G G K + R+ K +GLGFKTPREAI GTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
FTG VSIR RI+ G KM RT
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRT 84
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 106 bits (254), Expect = 1e-23
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MADQTERSFQKQPTVFLNRKR-GIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
MA+QTE++F KQP VFL+ K+ G G K + R+ K +GLGFKTPREAI GTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
FTG VSIR RI+ G KM RT
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRT 84
Score = 64.9 bits (151), Expect = 3e-11
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +2
Query: 299 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFN 163
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 106 bits (254), Expect = 1e-23
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MADQTERSFQKQPTVFLNRKR-GIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
MA+QTE++F KQP VFL+ K+ G G K + R+ K +GLGFKTPREAI GTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
FTG VSIR RI+ G KM RT
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRT 84
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 9/64 (14%)
Frame = +2
Query: 257 VIRRDYLHYLPKYNR---------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 409
++RR+YLH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKT
Sbjct: 86 IVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKT 144
Query: 410 VRFN 421
VRFN
Sbjct: 145 VRFN 148
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 103 bits (247), Expect = 8e-23
Identities = 52/84 (61%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MADQTERSFQKQPTVFLNRKRGI-GVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
MA+QTER+F KQP VFL K+ G K + R+ K++GLGFKTPREAI GTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
FTG VSIR RI+ G KM RT
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRT 84
Score = 76.6 bits (180), Expect = 1e-14
Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 7/62 (11%)
Frame = +2
Query: 257 VIRRDYLHYLPKYNR-------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVR 415
++RR+YLH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVR
Sbjct: 86 IVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVR 144
Query: 416 FN 421
FN
Sbjct: 145 FN 146
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 86.2 bits (204), Expect = 1e-17
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +3
Query: 51 FLNRKRGIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCPFTGNVSIRCRILTGVV 230
F +K G G K + R+ K++GLGFKTPREAI GTYIDKKCPFTG VSIR RI+ G
Sbjct: 8 FSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTC 67
Query: 231 QKMKMQRT 254
KM RT
Sbjct: 68 HSAKMNRT 75
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/55 (65%), Positives = 46/55 (83%)
Frame = +2
Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 77 IVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFN 130
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 33.5 bits (73), Expect = 0.099
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 233 ENEDAENFVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTV 412
E ED E++V+R +++ PK + M L PC+R E+ +I +PLS V
Sbjct: 106 EVEDEEDYVLREIDVYFTPKPFDEDTMLYVMQYPLRPCWRPYELNEICKEVRVKPLSSKV 165
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 236 NEDAENFVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSK 406
N+ ++ V+ D L + YNR+ KR H D IGD V + RPLSK
Sbjct: 11 NKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSRPLSK 65
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 404 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 297
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 287 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 418
PKY R E+ + H P ++GD+V + RP+SKT F
Sbjct: 996 PKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSRPISKTKHF 1037
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 242 DAENFVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 364
++EN V+R D L KYN+FE +++ L + E+
Sbjct: 430 ESENDVLRSDILTLKQKYNQFEVEVKSLKNELEAFEEEKEV 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,696
Number of Sequences: 37544
Number of extensions: 263407
Number of successful extensions: 597
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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