Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00210X
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 6e-25
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 32 0.23
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 27 6.6
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33) 27 8.8
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 8.8
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 27 8.8
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 110 bits (265), Expect = 6e-25
Identities = 57/95 (60%), Positives = 69/95 (72%), Gaps = 12/95 (12%)
Frame = +3
Query: 6 MADQTERSFQKQPTVFLNRKRGIGVKRSRKPLRYHKDVGLGFKTP------------REA 149
MA+QTER++QKQ +F NRKR +G +K LR+ ++VGLGFKTP REA
Sbjct: 1 MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60
Query: 150 IXGTYIDKKCPFTGNVSIRCRILTGVVQKMKMQRT 254
I GTYIDKKCPFTGNVSIR RILTG+ + MKM+RT
Sbjct: 61 IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRT 95
Score = 106 bits (254), Expect = 1e-23
Identities = 40/55 (72%), Positives = 51/55 (92%)
Frame = +2
Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
+IRRDYLHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFN
Sbjct: 97 IIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFN 151
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 365 GDIVTIGECRPLSKTVRFN 421
GD+V I ECRPLSK +FN
Sbjct: 29 GDVVRIKECRPLSKMKKFN 47
>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 221 RRRSENEDAENFVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIV 376
+++ E A N V++RD K + FE + ++ + R VE+G+ V
Sbjct: 52 KKKLSGEKALNAVLQRDVQEMCTKISNFEVKEEKLTAEIKAKDRQVELGEEV 103
>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 248 LHLHFLNDAGEDAAADRNVTSEGTLLVNVGTXNRLTG 138
LH+ F D E A N+ S T+++N+ T N++TG
Sbjct: 868 LHIDF-GDCFEVTAHLNNINSITTIIINIVTFNKVTG 903
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 358 HVPEARRQMHGHIPVPFLEP 299
HV +A R HG++P+P L P
Sbjct: 82 HVDQACRSFHGNLPLPVLAP 101
>SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 227 DAGEDAAADRNVTS--EGTLLVNVGTXNRLTGSLETEAXILVVSQRFSAPLHTNTSLA 60
+ G A++++ V S +GT L+N G + TG + + + + ++ ++ T+ S++
Sbjct: 184 NGGNTASSNKGVASSNKGTSLINTGRASSNTGGISSNSGVASTNKEGASSTETSPSMS 241
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 157 PSIASRGVLKPRPTSLWYLNG 95
P++ +GV PRPT WY G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674
>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 732
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 424 NIESNCFGQRSAFADRYNIT-NLHVPEARRQMHGHIPVPFLEPIVFG*VVKVIAADHE 254
N+ ++ S + YNIT NLH+ E P+P FG + + A D+E
Sbjct: 76 NLMADLSSDGSEVSKTYNITINLHLMEVLSSDGNESPIPRKGTFDFGGMQDIAALDYE 133
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 72 IGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKK 176
+ V + + PL H D+ + +K P + Y+DK+
Sbjct: 273 VKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 197 NVTSEGTLLVNVGTXNRLTGSLETEAXIL--VVSQRFSAPLHTNTSLAVQK 51
N + G LL+ + + +E +L ++S R++AP N L VQK
Sbjct: 1563 NFKNRGELLLRGDNTSEIVSLMEDSLMVLGSLMSNRYNAPFKKNIQLWVQK 1613
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 72 IGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKK 176
+ V + + PL H D+ + +K P + Y+DK+
Sbjct: 1554 VKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,395
Number of Sequences: 59808
Number of extensions: 306494
Number of successful extensions: 748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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