Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00210X
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   105   2e-23
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  105 bits (252), Expect = 2e-23
 Identities = 53/83 (63%), Positives = 63/83 (75%)
 Frame = +3

Query: 6   MADQTERSFQKQPTVFLNRKRGIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCPF 185
           M++QTER+F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+ GTYIDKKCP+
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPW 59

Query: 186 TGNVSIRCRILTGVVQKMKMQRT 254
            GNV IR  ILTGVV K KM RT
Sbjct: 60  AGNVPIRGMILTGVVLKNKMTRT 82



 Score =  100 bits (239), Expect = 7e-22
 Identities = 41/63 (65%), Positives = 50/63 (79%)
 Frame = +2

Query: 233 ENEDAENFVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTV 412
           +N+     V+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTV
Sbjct: 76  KNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTV 135

Query: 413 RFN 421
           RFN
Sbjct: 136 RFN 138


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 427 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 323
           +++E  CF Q   F D +N+T L + +  R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical
           protein Y104H12D.3 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -1

Query: 227 DAGEDAAADRNVTSEGTLLVNVGTXNRLTGSLETEAXILVVSQRFSAPLHTNTSL 63
           D   +  A +      T ++     N +TG+++    +  ++QR+  PLH + +L
Sbjct: 260 DDRANVGAMKRAIGPRTCMIIASAPNHITGTVDPIEKLAKLAQRYHIPLHVDCTL 314


>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +2

Query: 221 RRRSENEDAENFVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRD 355
           RRRSE  D E+F  R   L  LP+  R  K H     H  P   D
Sbjct: 791 RRRSEVLDWESFGRRNHNLPKLPRNIRASKTHLAHGKHKFPLSSD 835


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,138
Number of Sequences: 27780
Number of extensions: 226638
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)