Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00210X
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 93  KPLRYHKDVGLGFKTP 140
           +P+  HK   + F+TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 93  KPLRYHKDVGLGFKTP 140
           +P+  HK   + F+TP
Sbjct: 274 QPVHVHKQTAIAFRTP 289


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 101 QRFSAPLHTNTSLAVQKDCRLFLE*AFRLIRH 6
           +RF+  ++ N+    +   R+FL  AF  I+H
Sbjct: 499 ERFTYKININSDKETKGMMRIFLGPAFDEIKH 530


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 101 QRFSAPLHTNTSLAVQKDCRLFLE*AFRLIRH 6
           +RF+  ++ N+    +   R+FL  AF  I+H
Sbjct: 499 ERFTYKININSDKETKGMMRIFLGPAFDEIKH 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,081
Number of Sequences: 438
Number of extensions: 3093
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)