Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00210X
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   107   6e-24
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           105   1e-23
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           103   9e-23
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    29   1.8  
At3g26115.2 68416.m03254 expressed protein                             29   2.4  
At3g26115.1 68416.m03253 expressed protein                             29   2.4  
At4g26980.1 68417.m03882 expressed protein                             28   4.1  
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...    27   5.4  
At5g17670.1 68418.m02071 expressed protein                             27   5.4  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    27   7.2  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  107 bits (256), Expect = 6e-24
 Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   MADQTERSFQKQPTVFLNRKR-GIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
           MA+QTE++F KQP VFL+ K+ G G +  +   R+ K++GLGFKTPREAI GTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
           FTG VSIR RIL+G     KMQRT
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRT 84



 Score = 89.8 bits (213), Expect = 9e-19
 Identities = 38/55 (69%), Positives = 47/55 (85%)
 Frame = +2

Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
           ++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFN
Sbjct: 86  IVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFN 139


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  105 bits (253), Expect = 1e-23
 Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   MADQTERSFQKQPTVFLNRKR-GIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
           MA+QTE++F KQP VFL+ K+ G G +  +   R+ K++GLGFKTPREAI G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
           FTG VSIR RIL G     KMQRT
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRT 84



 Score = 87.0 bits (206), Expect = 6e-18
 Identities = 36/55 (65%), Positives = 46/55 (83%)
 Frame = +2

Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
           ++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFN
Sbjct: 86  IVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFN 139


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  103 bits (246), Expect = 9e-23
 Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   MADQTERSFQKQPTVFLNRK-RGIGVKRSRKPLRYHKDVGLGFKTPREAIXGTYIDKKCP 182
           MA+QTE++F KQP VFL+ K  G G +  +   R+ K++GLGFKTPREAI G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 183 FTGNVSIRCRILTGVVQKMKMQRT 254
           FTG VSIR RIL G     KMQRT
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRT 84



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 36/55 (65%), Positives = 46/55 (83%)
 Frame = +2

Query: 257 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 421
           ++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 86  IVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFN 139


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 287 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 418
           PKY R  +  +    H  P     ++GD+V + + RP+SKT  F
Sbjct: 77  PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSF 118


>At3g26115.2 68416.m03254 expressed protein
          Length = 433

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 209 PHPHRRRSENEDAENF-VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 385
           PH     S+++   +F ++R D LH L   N+  K        L P   D ++ D+VT G
Sbjct: 78  PHLGDEMSKSKQGSSFYILRDDLLHPLVNGNKARKLDA-----LLPLVEDHKVTDLVTCG 132

Query: 386 ECR 394
            C+
Sbjct: 133 GCQ 135


>At3g26115.1 68416.m03253 expressed protein
          Length = 427

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 209 PHPHRRRSENEDAENF-VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 385
           PH     S+++   +F ++R D LH L   N+  K        L P   D ++ D+VT G
Sbjct: 78  PHLGDEMSKSKQGSSFYILRDDLLHPLVNGNKARKLDA-----LLPLVEDHKVTDLVTCG 132

Query: 386 ECR 394
            C+
Sbjct: 133 GCQ 135


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 132 KTPREAIXGTYIDKKCPFTGNVSIRCRILTGVVQK 236
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 99  LRYHKDVGLGFKTPREAIXGTYIDKKCPFTGNVSIRCR 212
           +R++++ G  FK PR       +D +    G   +RC+
Sbjct: 4   VRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCK 41


>At5g17670.1 68418.m02071 expressed protein
          Length = 309

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 142 RGVLKPRPTSLWYLN 98
           RG L+PRP   WYLN
Sbjct: 86  RGTLRPRPVLDWYLN 100


>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 32  PKTTYSLSEPQERYWCEAEQKTVEIPQGCXPRFQD 136
           P +  S SE Q++Y C + + T ++  GC  +  D
Sbjct: 833 PFSEKSTSEKQKQYNCSSSENTSDVNDGCVMKQAD 867


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,468,857
Number of Sequences: 28952
Number of extensions: 206614
Number of successful extensions: 475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)