Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00209
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   112   2e-25
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   4.6  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   4.6  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   6.1  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  112 bits (270), Expect = 2e-25
 Identities = 53/91 (58%), Positives = 57/91 (62%)
 Frame = +1

Query: 259 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 438
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 439 XXXXXXXXXXXXXXXXXQARGHIMKRFPSFP 531
                            QARGH++ +    P
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/79 (55%), Positives = 61/79 (77%)
 Frame = +3

Query: 510 EKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQR 689
           +++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+
Sbjct: 144 DQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQK 203

Query: 690 KGPLIIFNKDQGLTRAFRN 746
            GP++I+ +D    RAFRN
Sbjct: 204 LGPVVIYGQDAECARAFRN 222



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 86  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 253
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +A
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKA 57


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 686 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 534
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 170 PIRPDLVNDVHVSMSKNSRQPYCVSKEAVTKPVLNHGVLDVLS 298
           P + D ++DVH+S S    Q     K     P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 537 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 713
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 714 KD 719
           KD
Sbjct: 473 KD 474


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 373 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 290
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 537 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 713
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 714 KD 719
           KD
Sbjct: 473 KD 474


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 71  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 247
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 248 EAVTKPVLNHGVLDVLSPE 304
           E +T  +++  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,135
Number of Sequences: 27780
Number of extensions: 347181
Number of successful extensions: 1128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)