Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00207
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 34 0.099
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 31 0.92
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968... 30 2.1
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 29 2.8
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 2.8
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.7
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 29 4.9
01_05_0356 - 21338488-21340062 29 4.9
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 28 6.5
10_08_0295 - 16581014-16583071 28 6.5
06_02_0214 + 13141213-13143741 28 6.5
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 6.5
02_04_0295 + 21682029-21683534 28 6.5
02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418... 28 8.6
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 34.3 bits (75), Expect = 0.099
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = -3
Query: 475 PSRTCPSPNQWRST*RRRGRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSPY*SP 305
P+R SP + RS RR R+P P +P RS + S RR GSP SP
Sbjct: 229 PARDRGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSP 285
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 31.1 bits (67), Expect = 0.92
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 347 NRAMS*NRFPLLKSLCITISLTVLS-*YGYISSCS---ACP 237
N M N F LLK LCIT+S LS Y Y+S S ACP
Sbjct: 329 NTPMVPNTFLLLKYLCITLSAVTLSPSYDYLSLVSFLDACP 369
>04_04_0998 -
29996117-29996242,29996345-29996486,29996613-29996812,
29997112-29997497,29997769-29998318,29998949-29999296
Length = 583
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 214 TEDQSRRMGHAEHEEIYPYQDRTVKEIVIHKDFNKG 321
TE++ + G E +EI + R EI IH D N G
Sbjct: 91 TEEKGKGKGEKEEDEIRNNRQRQEDEIYIHYDLNDG 126
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 602 WGGTRQGHLXGGRGVAPRVPHRLLEESLCP 691
W G+R GH GGR VA ++PH + + + P
Sbjct: 372 WTGSR-GHEGGGRSVAHQLPHEVSLDEVHP 400
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = -2
Query: 239 PIRRL*SSVP*RRQRSERP*APRSDGSASLPLRKRS 132
PIRR S P RR RS R +PR D + P+R+RS
Sbjct: 311 PIRRRSPSPPPRRLRSPRHLSPRRDRGS--PIRRRS 344
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 38 VDGETKFGEFPWMVAILKVEPVDDNEP 118
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 587 DVHVLWGGTRQGHLXGGRGVAPRVPHRLLEESLCPIRHRN 706
D H ++Q + GG G APR P+R++ S P + N
Sbjct: 78 DPHRRHSLSQQREVGGGIGSAPRSPYRMVHGSASPAQPNN 117
>01_05_0356 - 21338488-21340062
Length = 524
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 421 GRAPWPVGDTPLPRSGLNLLESRG 350
G+ P P G TPLP G NLL+ RG
Sbjct: 35 GKPPLPPGPTPLPLIG-NLLDLRG 57
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 146 GGGSLIHPNVVLTAAHYVAAAKELKIRAGEWDTQNTR 256
G S++HPNV +T + A WDTQ T+
Sbjct: 67 GYSSMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTK 103
>10_08_0295 - 16581014-16583071
Length = 685
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 163 PSERGAHGRSLRC---RR*GTEDQSRRMGHAEHEEIYPYQDRTVKEIVIHKDFN 315
P +R A R R RR ED G H E P + R++++++I +D++
Sbjct: 277 PRQRAAVRRGCRALPQRREDPEDDEDDNGRRRHAEDIPPRRRSLRDVIIGRDWS 330
>06_02_0214 + 13141213-13143741
Length = 842
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 92 VEPVDDNEPEGQKLNVYVGGGS--LIHPNVVLTAAHYVAAA 208
V P E G K+N GGGS LI P++V + A +AA+
Sbjct: 246 VNPSVTREVNGGKVNYMKGGGSTPLIAPDIVYSTATELAAS 286
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 357 DSSRFSPERGSGVSPTGQGARPRRR 431
+++RF+ GSG S T G+ PRRR
Sbjct: 772 EATRFASISGSGASVTQNGSTPRRR 796
>02_04_0295 + 21682029-21683534
Length = 501
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3
Query: 427 RRGRAPWPVGDTPLPRSGLNLLESRG 350
R R P P G TPLP G NLL RG
Sbjct: 34 RSSRPPLPPGPTPLPLIG-NLLSLRG 58
>02_05_0424 +
28841562-28841569,28841636-28841714,28841826-28841894,
28841965-28842054,28842132-28842270,28842523-28842625,
28842708-28842760,28842849-28842915,28843087-28843195,
28843588-28843653,28843740-28843808,28843893-28843959,
28844038-28844154,28844433-28844656,28845083-28845094
Length = 423
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 222 SEPANGTRRTRGDISVSRQDSQGNRDTQGL-Q*GEPVLRHSSVVP 353
SE R + G +S ++ S + + GL + G PVLRHS +P
Sbjct: 313 SEHGMPRRYSTGTLSTTKPHSNASLKSSGLSKTGHPVLRHSRSLP 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,734,862
Number of Sequences: 37544
Number of extensions: 579875
Number of successful extensions: 2246
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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