Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00207
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.13 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +1

Query: 334 DIALLFLETPVDSAPNVGVACLPPAR-ERAPAGVRCFATGWGKDKFGKEGRYQVIMKKVA 510
           DIALL  E  +     VG ACLP      + AG      GWG   F   G    I++K  
Sbjct: 257 DIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSF--NGMLSHILQKTT 314

Query: 511 CRSWT 525
               T
Sbjct: 315 LNMLT 319



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 149 GGSLIHPNVVLTAAHYV--AAAKELKIRAGEWD 241
           G ++I    VLTAAH +      +L I  GE D
Sbjct: 189 GATIISKRYVLTAAHCIIDENTTKLAIVVGEHD 221


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 652 RGDPPSPXQVSLSGSPP 602
           RG PP+P Q    G PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 417 RPRRRQVLRHWLGEGQVREGR*IPGHHEE 503
           R   R+  R   G G+ RE R IP H+ E
Sbjct: 308 RETSRERSRDRRGRGRSREHRIIPSHYIE 336


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 250 HEEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 348
           H++ YP  D    +I  +    +  LFY + L+
Sbjct: 211 HKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLI 243


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 515 RHATFFMMTWYLPS 474
           R   FFMM +Y+PS
Sbjct: 229 REMGFFMMDYYIPS 242


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 236 WDTQNTRRYIRIKTG 280
           WD    R Y +IKTG
Sbjct: 113 WDEDQHRLYAQIKTG 127


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 364 VDSAPNVGVACLPPARERAPAG 429
           + SAP+   +  PPA+  A AG
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAG 538


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 244 AEHEEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 348
           + +EE YP       +I  +    +  LFY + L+
Sbjct: 223 SRNEEYYPCCTEPYSDITFNITMRRKTLFYTVNLI 257


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +1

Query: 211 GTEDQSRRMGHAEHEEIYPYQDRTVKE 291
           G+E++  ++  + +   YP Q+R+ +E
Sbjct: 10  GSEEEGNQLNRSFYSASYPPQNRSQEE 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,293
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)