Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00207
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei... 29 2.3
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 29 2.3
At2g27950.1 68415.m03388 expressed protein 29 4.1
At3g49290.1 68416.m05387 expressed protein 28 5.4
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin... 28 7.2
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 28 7.2
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 28 7.2
At2g24800.1 68415.m02967 peroxidase, putative similar to peroxid... 28 7.2
At5g11660.1 68418.m01363 hypothetical protein many predicted pro... 27 9.5
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote... 27 9.5
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote... 27 9.5
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 27 9.5
>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 421 GRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSP 317
GR+PW GD PRSG N +E C R +P
Sbjct: 128 GRSPWKSGDWICPRSGCNEHNFASRSE-CFRCNAP 161
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -3
Query: 619 LSGSPPEHMNVECNWKNRPSRVLLNWLWQVFR 524
+SG P ++ V+ N +N + ++NWLW+++R
Sbjct: 527 VSGKKPSYVLVKDN-QNNYNNSIVNWLWELYR 557
>At2g27950.1 68415.m03388 expressed protein
Length = 767
Score = 28.7 bits (61), Expect = 4.1
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Frame = +3
Query: 222 SEPANGTRRTRGDISVSRQDSQGNRDTQGLQ*GEPVL-----RHSSVVPRDSSR-FSPER 383
S P+N R D ++S D RD+ L GE L S V +SS P +
Sbjct: 68 SSPSNTMRGNGCDSNISAHDIV--RDSVNL--GENELGGWSPTQSHVGSHNSSEDLGPFQ 123
Query: 384 GSGVSPTGQGARPRRRQVLRHWLGEG 461
S G G R R RQ+ R W G
Sbjct: 124 SEHFSDLGMGERERVRQIFREWTSSG 149
>At3g49290.1 68416.m05387 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 455 PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSRNNRAMS*NRFPLLKS 306
P PV K + + + R AT +F + ++ R++S +RFPLL+S
Sbjct: 179 PPPVRKSTSQSSSPRQPPQRSATFSFTSTIPKKEQDKRSVSPHRFPLLRS 228
>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 465
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 86 LKVEPVDDNEPEGQKLNVYVGGGSLIHPN 172
L+ + DD+ P K+ +GGG++I PN
Sbjct: 242 LEDDEFDDHPPPPNKMKPMMGGGNMIMPN 270
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 86 LKVEPVDDNEPEGQKLNVYVGGGSLIHPN 172
L+ + DD+ P K+ +GGG++I PN
Sbjct: 242 LEDDEFDDHPPPPNKMKPMMGGGNMIMPN 270
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 479 PSFPNLSFPQPVAKHLTPAGARSL--AGGRHATPTFGAESTGV 357
PS SFP P +H +P G S GG A P + ST V
Sbjct: 21 PSRNRNSFPPPTNRHPSPIGRMSSGGGGGGSAAPRQRSNSTSV 63
>At2g24800.1 68415.m02967 peroxidase, putative similar to peroxidase
[Spinacia oleracea] gi|1781338|emb|CAA71496
Length = 329
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 74 MVAILKVEPVDDNEPEGQKLNVYVGGGSLIHPNVVLTAAHYVAAA 208
M A ++ +D + + +N++ G +H VVL+ AH + AA
Sbjct: 155 MAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVVLSGAHTIGAA 199
>At5g11660.1 68418.m01363 hypothetical protein many predicted
proteins, Arabidopsis thaliana
Length = 308
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 447 SGEAPDAGGGALPGRWETRHSHVRG 373
SG +P G G LP E + +HV+G
Sbjct: 230 SGISPPMGNGQLPSEDENKSAHVKG 254
>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 608 GTRQGHLXGGRGVAPRVPHRLLEESLCPIRHRN 706
G R+G + GGRG PR+ H+ E + P +N
Sbjct: 214 GNRRGQIHGGRGRGPRI-HQPRRELVPPPTQQN 245
>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 608 GTRQGHLXGGRGVAPRVPHRLLEESLCPIRHRN 706
G R+G + GGRG PR+ H+ E + P +N
Sbjct: 214 GNRRGQIHGGRGRGPRI-HQPRRELVPPPTQQN 245
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -2
Query: 479 PSFPNLSFPQ--PVAKHLTPA-GARSLAG-GRHATPTFGAEST 363
P+F N SF P TPA GA S G +TP+FGA ST
Sbjct: 133 PAFGNTSFGSSTPFGATNTPAFGAPSTPSFGATSTPSFGASST 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,048
Number of Sequences: 28952
Number of extensions: 386831
Number of successful extensions: 1170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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