Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00206
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   2.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   3.6  

>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 727 AQSS*GIANT*LMSTSNLGSLSRRYAITFF 638
           A S+ GI    L   SN G LSR++A TFF
Sbjct: 88  ASSNGGIVIQVLGEMSNKGKLSRKFAQTFF 117


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 235 TSICPGYGRLVCG 273
           T+ CPGYG L+CG
Sbjct: 96  TTPCPGYGSLMCG 108


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 549 FIFCVYHVRIVNAVYVLSACVQCAGWFRSIFQVMFPKRVSP 427
           +IF ++ +R++ + + LS C+     F+ +F   F +  SP
Sbjct: 179 YIFTLFPIRVLISFFTLSRCI-----FQGLFSTFFHRNSSP 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,384
Number of Sequences: 5004
Number of extensions: 65161
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)