Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00206
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0298 - 19272257-19273714 31 1.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 31 1.2
08_02_1289 - 25923916-25924586,25925148-25926630 30 2.2
07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677... 29 3.8
04_04_1141 + 31180906-31181249,31181719-31181862,31181971-311820... 29 3.8
04_03_0513 - 16681227-16683936,16685572-16685966 29 3.8
01_04_0011 + 15067536-15068236,15068283-15068898 28 6.6
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663... 28 8.8
09_01_0097 - 1450544-1452058 28 8.8
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 28 8.8
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 28 8.8
>06_03_0298 - 19272257-19273714
Length = 485
Score = 30.7 bits (66), Expect = 1.2
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +2
Query: 98 PFSKLTVPGNENGEVFNVYCVFVMFERGDRKNCKQKKVPRGASCTTLRFARDMGDWYVVE 277
PFS TV G + F + F+ + R V R + LR A D W V
Sbjct: 83 PFSPTTVAGGGDARRFPSHAEFLRYLRDFCDAFGLMDVVR-LNTRVLRVAADRDGWAVRS 141
Query: 278 YYASAE-EALSYSCMKAV--FTQDDHVPAIDGTIEWTPGVTMNFTYRFADDPIGETL 439
E E + + + AV +TQ +P+IDG W + +YR D GE +
Sbjct: 142 RRGEVETEEVFDAVVVAVGSYTQP-RLPSIDGMEAWPGRQLHSHSYRVPDSFRGEVV 197
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -1
Query: 733 FTAQSS*GIANT*LMSTSNLGSLSRRYAITFFCS 632
F A S GIAN ++T N+G L Y++TF CS
Sbjct: 327 FEALSQVGIAN---VTTKNIGKLESSYSLTFKCS 357
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 545 IKLGRYCCTARTDGRRSLPHRIRSVQDNQTAEERD 649
IK+G CC A D R L + S+++ + +E D
Sbjct: 661 IKIGMACCEAAVDSRWELKTAVESIEELKGGKEED 695
>07_03_0465 +
18465966-18466206,18467424-18467443,18467444-18467729,
18468557-18468666,18468744-18468909,18469303-18469433
Length = 317
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = -1
Query: 583 VCPRSAAVTPKF-----YILCLSRTYCKCRICAFSVCPVRRLVQIDLPGNVSEESLAYGV 419
V P SA+ PK ILCL + C C I S+C + + +D+ G +S A V
Sbjct: 65 VVPSSASSMPKGRCSEDLILCL-QVCCICIIVCKSLCIDKSM--LDIAGESESDSEASDV 121
Query: 418 VREPVRKVHGHSWCPLYCTIYG 353
HSW YC++ G
Sbjct: 122 SGSDGED---HSWISWYCSLRG 140
>04_04_1141 +
31180906-31181249,31181719-31181862,31181971-31182054,
31182196-31182236,31182726-31182803,31183050-31183139,
31183236-31183325,31183808-31183962,31184737-31184796
Length = 361
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 529 RTYCKCRICAFS--VCPVRRLVQIDLPGNVSEESLAYGVVREPVRKV 395
R YC R+ S +RR++Q + + ES+ +G VRE V +V
Sbjct: 84 RRYCLARVTGISSHAIAIRRIIQTFVLSDKIRESMDWGRVREKVVRV 130
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 580 CPRSAAVTPKFYILCLSRTYCKCRICAFSVCPVRRLVQIDLPGN 449
C A+ TP+ +L L T+ IC S+ +R LV+I+L N
Sbjct: 245 CDGFASSTPRLEVLRLRNTHLDAPICG-SLSAIRSLVEINLKFN 287
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +2
Query: 584 GRRSLP---HRIRSVQDNQTAEERDGVPARQT 670
GRR+LP +R+V++ A+E G+P RQT
Sbjct: 308 GRRTLPSPGEMLRAVEEYNRAKEAAGLPKRQT 339
>10_07_0079 +
12665141-12665167,12665613-12665702,12665783-12666310,
12666341-12667741
Length = 681
Score = 27.9 bits (59), Expect = 8.8
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 453 PGRS--I*TSLRTGHTLKAHIRHLQYVRDRHRI*NLGVTAALRGQTEGARYLTAFVLSRT 626
PG S I SLRT H H++HL+Y+ R+ ++ G+ + ++ R
Sbjct: 201 PGDSLRILPSLRTIHDSLCHLKHLRYLELRYT--DISELPRNIGRMKFLEHIGVRGCHRL 258
Query: 627 TKLQKNVMAYLRDKLPRFEVDINYVFAIP 713
+KL +++ D L +D + AIP
Sbjct: 259 SKLPSSIIKL--DNLRHLSIDETKIRAIP 285
>09_01_0097 - 1450544-1452058
Length = 504
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 587 RRSLPHRIRSVQDNQTAEERDGVPARQTAKIRSGH 691
RR LP + + QD+ AEE D VP T + H
Sbjct: 193 RRDLPRVVPTKQDDVGAEEADPVPVLLTVADTAAH 227
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -1
Query: 682 SNLGSLSRRYAITFFCSLVVLDRTNAVR*RAPSVCPR--SAAVTPKFYILCLSRTYCKCR 509
+ LG L+ R+A+ +L L+ +A P P A + P F +L +S
Sbjct: 92 TRLGRLAPRFAVDGLRNLTRLEAFSAPGFGLPGSLPAWLGAGLAPTFQLLDISGCAVTGE 151
Query: 508 ICAFSVCPVRRLVQIDLPGNV 446
I A ++ + L ++L GN+
Sbjct: 152 IPASAIAGLSNLTTLNLAGNL 172
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 562 VTPKFYILCLSRTYC-KCRICAFSVCPVRRLVQIDLPGNVSEES 434
VTP + +S C C IC VCP + I+LP ++ +E+
Sbjct: 45 VTPSSRVSLISEELCIGCGICV-KVCPFDAIQIINLPSDLDKET 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,343,313
Number of Sequences: 37544
Number of extensions: 433826
Number of successful extensions: 1215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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