Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00206
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42877| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    31   0.96 
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           31   0.96 
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 29   2.9  
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 29   2.9  
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)              29   5.1  
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)             28   9.0  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       28   9.0  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     28   9.0  
SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)            28   9.0  

>SB_42877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 561 TAALRGQTEGARYLTAFVLSRTT---KLQKNVMAYLRDKLPRFEVD 689
           TA + GQT G+ ++ A +   TT   + +KNV A +RD  PR  +D
Sbjct: 30  TALVIGQTTGSTHIEAQLRENTTSQGERKKNVAAVVRDNQPRRRLD 75


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 586 SVCPRSAAVTPKFYILCLSRTYCKCRICAFSVCPVRRLVQIDLPGNV 446
           S+CP S A    F I C  R  C       S+CP RRL+ +  P  V
Sbjct: 226 SMCPPSRAQVDVFPIACSCR--CDSHSFLMSMCPHRRLMSMCSPSRV 270


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 615 LSRTTKLQKNVMAY-LRDKLPRFEVDINYVFAIP 713
           +S + KLQ+N  A  LRDK PRF VD+ +V  IP
Sbjct: 211 ISASAKLQRNATALPLRDKNPRFVVDV-HVERIP 243


>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 794

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 511 RICAFSVCPVRRLVQIDLPGNVSEESLAYGVVREPVRK 398
           R+C    C   + V++ +  N  +ESL +   REP  K
Sbjct: 377 RVCQSKECKETKYVEVSVDNNQEDESLGFFSTREPSSK 414


>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 1750

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 511 RICAFSVCPVRRLVQIDLPGNVSEESLAYGVVREPVRK 398
           R+C    C   + V++ +  N  +ESL +   REP  K
Sbjct: 220 RVCQSKECKETKYVEVSVDNNQEDESLGFFSTREPSSK 257


>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
          Length = 1250

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 362 GTIEWTPGVTMNFTYRFADDPIGETLFGN 448
           G   W+P VT  F  R  D P   TL GN
Sbjct: 185 GFSSWSPDVTRQFCRRLNDPPTNLTLSGN 213


>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
          Length = 631

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 403 RKVHGHSWCPLYCTIYGGYVIVLSKHGFHTTV*ECFFSTRVVLNH 269
           +K+  +S+  + C I GGY  VL +   H    E +F+   V NH
Sbjct: 17  KKIKMYSFLAVLCLIAGGYARVLDEQYCHNQ--ETYFTIYQVPNH 59


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -3

Query: 731  HGAVVVRDREHIVDVHFESWQFVSQVRHHVLL----QFGCPGQNECGEVTSAFRL 579
            H   +V+ R+H+  VH +  +  S +  H  L    ++ C  +NE G+V SA RL
Sbjct: 2335 HNGKLVQPRDHVDIVHDD--EHSSLILMHCPLDLSGKYTCVAENEVGQVQSAARL 2387


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 532  SRTYCKC-RICAFSVCPVRRLVQIDLPGNVSEESLAYGV 419
            +R  CKC  +     C VRR V    PG+V E+ L  G+
Sbjct: 2194 NRFNCKCPSVYQGRTCDVRRAVVAAKPGSVLEDGLIIGL 2232


>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
          Length = 716

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 728 GAVVVRDREHIVDVHFESWQFVSQVRHH 645
           G  V +++  + DVHFE+W  +   R+H
Sbjct: 636 GDDVNQNKRKVADVHFEAWMRMLDARNH 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,274,478
Number of Sequences: 59808
Number of extensions: 537103
Number of successful extensions: 1445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)