Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00206
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    29   4.2  
At4g33530.1 68417.m04765 potassium transporter family protein si...    28   5.6  
At1g27510.1 68414.m03353 expressed protein                             28   7.3  
At1g18620.1 68414.m02321 expressed protein                             28   7.3  

>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 646 TFFCSLVVLDRTNAVR*RAPSVCPRSAAVTPKFYILCLSRTY 521
           TF  +  VLD  +  R R   V P+S A  PK + L LS  +
Sbjct: 265 TFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNF 306


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 555 PSFIFCVYHVRIVNAVYVLSACVQCAGWFRSIF 457
           P++I+  +    VNA Y L  CV CA    ++F
Sbjct: 335 PAYIYFFFKRNSVNAWYALGGCVLCATGSEAMF 367


>At1g27510.1 68414.m03353 expressed protein
          Length = 651

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 639 KNVMAYLRDKLPRFEVDINYVFAIPHDD 722
           KNV+ +L+DK+P  ++ +  V  IP ++
Sbjct: 297 KNVIKFLKDKIPGLKLKVMDVIKIPEEE 324


>At1g18620.1 68414.m02321 expressed protein
          Length = 978

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 346 RTRHRWYNRVDTRSDHELYVPVRGRPHRRDSLRK 447
           +T H +YN VD +     YV  RG+      L++
Sbjct: 204 KTSHHYYNEVDMKDTSRYYVDSRGKSKSGKKLKE 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,168
Number of Sequences: 28952
Number of extensions: 345608
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)