Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00205
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 113 2e-26
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 108 4e-25
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.068
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 27 1.9
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 2.6
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.4
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 5.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 7.8
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 113 bits (271), Expect = 2e-26
Identities = 46/79 (58%), Positives = 63/79 (79%)
Frame = +2
Query: 17 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 197 KIHKRSKIKPFVKVVNYNH 253
+I KRS++KPF+KV+NYNH
Sbjct: 61 RIAKRSRVKPFIKVINYNH 79
Score = 46.0 bits (104), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 253 LMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 417
LMPTRY ++ K + +P++R + + FEE+Y++GK+ WFF LRF
Sbjct: 80 LMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 108 bits (260), Expect = 4e-25
Identities = 44/79 (55%), Positives = 62/79 (78%)
Frame = +2
Query: 17 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 197 KIHKRSKIKPFVKVVNYNH 253
+I +RS++KPF+KVVNYNH
Sbjct: 61 RIARRSRVKPFIKVVNYNH 79
Score = 52.8 bits (121), Expect = 3e-08
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 253 LMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 417
LMPTRY ++ K +A K+P +R R + FEE+Y+SGK+ WFF LRF
Sbjct: 80 LMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.068
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 8 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 109
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 23 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 106
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 384 EEQVVLPEA*VLSVILKENKRYVSNEKKKKKK 479
E QVV+ + + ILKE ++Y+ N KK KK
Sbjct: 250 ENQVVVNDYRQMDKILKEERQYLLNMCKKIKK 281
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 188 GKNKIHKRSKIKPFVKVVNYNH 253
G + I R K P K+VNYNH
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNH 49
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 123 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 34
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 217 LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 104
LGP+ + + L HFP DT + S P GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 280 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 414
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 170 KVHKRMGKNKIHKRSKIKPFVKVV 241
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 5.9
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = +1
Query: 67 VRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPE----------SAQEDGKE*NPQEVQ 216
++G Y + E R L++++ FR+ + E S + GK+ +PQ +
Sbjct: 751 IKGLISYYAHESGVRNLKKSIEKIFRKTSFSIVKEIDDELNSKEKSTGKSGKKTSPQSSE 810
Query: 217 DKAFREGCKL*SLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNT 351
D A +E + +P + ++ EK K L P + ++T
Sbjct: 811 DAANKEASSVPLKVPDKVNIEIE-EKDLTKYLGPPIYTSQRLYDT 854
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 274 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 390
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 274 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 372
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 305 FALNFSKLKSTV*RVGISDYSLQPSRKALS 216
+ALNF ++K+ + R +DY +K +S
Sbjct: 1393 YALNFLQIKTLLHRYDYADYEAHVPKKTMS 1422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,783
Number of Sequences: 5004
Number of extensions: 39361
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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