Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00205
(481 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 133 8e-32
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 29 2.6
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 28 4.6
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 28 4.6
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 28 4.6
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16) 27 6.1
SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 27 6.1
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 27 8.0
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 133 bits (321), Expect = 8e-32
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +2
Query: 17 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 197 KIHKRSKIKPFVKVVNYNH 253
+ KRSK+KPFVKV NYNH
Sbjct: 61 RTAKRSKVKPFVKVFNYNH 79
Score = 63.7 bits (148), Expect = 8e-11
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +1
Query: 163 PPESAQEDGKE*NPQEVQDKAFREGCKL*SLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 336
P + + GK+ + + K F + LMPTRY+VD +K KD+ +DPA +KK
Sbjct: 50 PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109
Query: 337 LRFNTRVRFEERYKSGKNKWFFQKL 411
+ EERYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134
>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 239 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 120
QP + A S GFYS+ + C C Y ++ H ++ C
Sbjct: 97 QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -3
Query: 362 KRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RV---GISDYSLQPS-RKALSWTS 207
K T+ L+ +FL FA +RSF NFSK+ + ++ G + QPS + WTS
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKVAEPLRQLLITGPAKKHKQPSPPSSFPWTS 731
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 254 SDYSLQPSRKALSWTSCG 201
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 301 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 417
+KDL + P +K FN + E R++ G K F+++LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 362 KRTRVLKRSFLRFAGSFRSFALNFSKL 282
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 362 KRTRVLKRSFLRFAGSFRSFALNFSKL 282
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 362 KRTRVLKRSFLRFAGSFRSFALNFSKL 282
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 104 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 250
D+ D Y + AG+ + + HK+ G K + KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 289 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 414
++ S D +D +KRK++RF FE + YK+ FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281
>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 159 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGY 4
+S+ A+ + PY +P+S FL ++ P Y+PL P + L Y
Sbjct: 13 VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 362 KRTRVLKRSFLRFAGSFRSFALNFSKL 282
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
Length = 105
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 106
++P+ ++GK K G V V+ GRY G ++V+ D
Sbjct: 58 DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93
>SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 295
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -3
Query: 371 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVGISDYSLQPSRKALSWTSCGFYS 192
L S+ K+++ A S + A + + L+S + + S++ K CG
Sbjct: 91 LLSEENLTFKKAY-DIASSMETTAQHMADLQSAPSTLSSTSASVKSENKECY--RCGKNH 147
Query: 191 FPSSCALSGGTCRYQRRK-HARTAC 120
PS C TC Y ++K H C
Sbjct: 148 HPSKCRFKEATCHYCKKKGHIVAKC 172
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 298 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 414
SAK+L++ +RK+ +NT E RY+ K K Q R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,493
Number of Sequences: 59808
Number of extensions: 296650
Number of successful extensions: 915
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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