Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00205
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 127 4e-30
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 127 4e-30
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.3
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 5.3
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 27 9.3
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 27 9.3
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 27 9.3
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 9.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 9.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 9.3
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 27 9.3
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 127 bits (307), Expect = 4e-30
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +2
Query: 17 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 197 KIHKRSKIKPFVKVVNYNH 253
KI KR+K+KPF+KVV+Y H
Sbjct: 61 KIEKRNKLKPFLKVVSYTH 79
Score = 70.9 bits (166), Expect = 4e-13
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 163 PPESAQEDGKE*NPQEVQDKAFREGCKL*SLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 336
P + ++ GK+ + + K F + L+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 337 LRFNTRVRFEERYKSGKNKWFFQKLRF 417
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 127 bits (307), Expect = 4e-30
Identities = 58/79 (73%), Positives = 66/79 (83%)
Frame = +2
Query: 17 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 197 KIHKRSKIKPFVKVVNYNH 253
KI KR+K+KPF+KVV+Y H
Sbjct: 61 KIEKRNKLKPFLKVVSYTH 79
Score = 70.9 bits (166), Expect = 4e-13
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 163 PPESAQEDGKE*NPQEVQDKAFREGCKL*SLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 336
P + ++ GK+ + + K F + L+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 337 LRFNTRVRFEERYKSGKNKWFFQKLRF 417
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 23 KIMKPGKVVLVLSGRYAGRKAIVVK 97
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 83 PCDPRTGHLRPALLYPASLSYPS 15
P D TGH RPAL P PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 275 LTSALKNSAQKT*KTLQNVRSCVSTREYVLK 367
L AL+NSAQK L ++ + VST Y L+
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSLE 681
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 116 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNH 253
SD P A I R+ + +R+G + K PFVK +++NH
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNH 388
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 116 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNH 253
SD P A I R+ + +R+G + K PFVK +++NH
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNH 388
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 365 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 270
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 365 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 270
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 365 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 270
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 116 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNH 253
SD P A I R+ + +R+G + K PFVK +++NH
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNH 381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,167
Number of Sequences: 27780
Number of extensions: 214656
Number of successful extensions: 765
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -