Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00205
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            99   8e-22
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    97   4e-21
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            97   5e-21
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    33   0.075
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    33   0.13 
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    33   0.13 
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   0.70 
At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to...    29   1.2  
At4g34630.1 68417.m04918 expressed protein                             29   1.6  
At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain...    27   8.7  
At4g37090.1 68417.m05254 expressed protein                             27   8.7  
At3g23320.1 68416.m02941 hypothetical protein                          27   8.7  

>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score =   99 bits (238), Expect = 8e-22
 Identities = 45/93 (48%), Positives = 62/93 (66%)
 Frame = +2

Query: 17  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
           M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 197 KIHKRSKIKPFVKVVNYNH*CQHVIQLTSALKN 295
           K  K+S++K F KV+NY H       L   LKN
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKN 93



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = +1

Query: 136 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLMPTRYTVDFSFEKF-SAKDL 312
           C     ++ P +  ++D  +   ++ + K F +      +MPTRYT+D   +   SA  +
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAI 100

Query: 313 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 417
               K+       + +FEER+K+GKN+WFF KLRF
Sbjct: 101 SSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 39/79 (49%), Positives = 59/79 (74%)
 Frame = +2

Query: 17  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
           M K +K  K V++L GRYAG+KA+++K++D+GTSD+ YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 197 KIHKRSKIKPFVKVVNYNH 253
           K  K+S++K F+K+VNY H
Sbjct: 61  KTAKKSRVKCFIKLVNYQH 79



 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +1

Query: 136 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLMPTRYTVDFSFEKFSAKD-L 312
           C     ++ P +  ++D  +   ++ + K F +      LMPTRYT+D   ++ +  D L
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100

Query: 313 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 417
           K   K+       + + EER+K+GKN+WFF KLRF
Sbjct: 101 KSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 97.1 bits (231), Expect = 5e-21
 Identities = 38/79 (48%), Positives = 58/79 (73%)
 Frame = +2

Query: 17  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 196
           M K +K  K V++L GRYAG+KA+++K++D+G  D+PYGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 197 KIHKRSKIKPFVKVVNYNH 253
           K  K+S++K F+K+VNY H
Sbjct: 61  KTAKKSRVKCFIKLVNYQH 79



 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +1

Query: 136 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLMPTRYTVDFSFEKFSAKD-L 312
           C     ++ P +  ++D  +   ++ + K F +      LMPTRYT+D   ++ +  D L
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100

Query: 313 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 417
           +   K+       + + EER+K+GKN+WFF KLRF
Sbjct: 101 QSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 33.5 bits (73), Expect = 0.075
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 8   PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 112
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 8   PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 112
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 8   PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 112
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 343 FNTRVRFEERYKSGKNKWFF 402
           +N R + E+RYKS K KWF+
Sbjct: 58  YNKRNKKEQRYKSPKGKWFY 77


>At1g21890.1 68414.m02740 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 389

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -1

Query: 403 GRTTCSSHFCTSLQNVLAC*NAASYVLQGLSGLLR*IFQS*SQLYNVLASVIIVYN-LHE 227
           G T  S+ F ++  NVL    A ++VL  +  L    F+    +  V+ +VI V   L  
Sbjct: 95  GMTYTSATFASATANVLP---AITFVLAIIFRLESVNFKKVRSIAKVVGTVITVSGALLM 151

Query: 226 RLYLGPLVDFI 194
            LY GP+VDFI
Sbjct: 152 TLYKGPIVDFI 162


>At4g34630.1 68417.m04918 expressed protein
          Length = 199

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 104 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 217
           D+G  D+ Y  ++    +  PR V K++G+ ++ K  K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167


>At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to
           Af10-protein (GI:1724114) [Avena fatua]; similar to
           clathrin assembly protein AP180 (GI:6492344) [Xenopus
           laevis]; Af10-protein, Avena fatua, EMBL:U80041
          Length = 560

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 371 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVGISDY-SLQPSRKALSWTSCGFY 195
           LSS        S   F GSF+S + NF   K    R   +DY S Q SR+ +  T    Y
Sbjct: 165 LSSTGITYKSGSSASFGGSFQSGSSNFDSYKDRDSREDKNDYESFQKSRRGVK-TEEQSY 223

Query: 194 SFPSSCALSGGT 159
           +   S +  G T
Sbjct: 224 TSKKSFSRYGST 235


>At4g37090.1 68417.m05254 expressed protein
          Length = 186

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 384 EEQVVLPEA*VLSVILKENKRYVSNEKKKKKK 479
           +EQ  L E   L  I +ENK  VS EKK+++K
Sbjct: 19  QEQAKLEEE-ALWKIQRENKNRVSREKKERRK 49


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  NEAG*SSAGLKWPVRGSQG 84
           N AG   +GL+W +R SQG
Sbjct: 46  NHAGRQDSGLRWIIRNSQG 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,049,653
Number of Sequences: 28952
Number of extensions: 204833
Number of successful extensions: 638
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)