Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00204
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    30   0.35 
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    28   1.4  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.9  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.5  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   4.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   7.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.5  
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.9  

>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +1

Query: 565 FSKNATVEVEYIFTTEKKSSLQRQRFNSLPVSEVPELLKNEFIAVENARQVHICTDCDVE 744
           +SK++  E +Y       SS   + +N LP+     LL+N    V N  +    ++ +  
Sbjct: 128 YSKDSEDEQDYELRPRVSSSWNNESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEAS 187

Query: 745 IELNDE 762
           +E++ +
Sbjct: 188 LEIDSD 193


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 114 YNCISRSVCLDFVHFNVDCWCNFN---VRAWYDRM 19
           +NC   S   DF  FN+  WC ++   V  +YDR+
Sbjct: 209 FNCGDESERADFYAFNMYEWCGYSSMTVSGYYDRI 243


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 183 FLGVYLIISKLFWTFWSLYGHSTSTVPP 266
           F+G +L+   +FW  W+ Y H    + P
Sbjct: 420 FIGCFLLPISMFWFAWTCYPHHIHWIVP 447


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 821 QLRKMHFKIEVLLQRFHEWLSSFNSISTS 735
           QLR++H KI+ L +    + + +NSI TS
Sbjct: 568 QLRELHTKIDELRETVSNFRADYNSIRTS 596


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 646 SLPVSEVPELLKNEFIAVENARQVHICTDCDVEIELNDE 762
           ++  +++PEL  N+     NA +++   D DVEIEL +E
Sbjct: 350 AISATDIPEL--NDGFNTNNAAEINPEDDEDVEIELREE 386


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 696 CRKRETSSHMHGL*RRDRVK**KPLMESLQKHFNLEVHLP 815
           C  ++T  H+H   RRDR    KPL+E  ++++ ++  +P
Sbjct: 62  CVCQKTRKHLHVKVRRDRG---KPLIEEPEENYGIKDRIP 98


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 509 KSKHSTLPKELTGNAQEDNFPKTRQSKLNTFLRLRRKVACN 631
           KS + + P   T  + + NF   + + LNT ++    ++ N
Sbjct: 154 KSANVSFPSSSTPPSSDSNFSSIQNTDLNTSIKFTENISAN 194


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 761 SSFNSISTSQSVHM*TCLAFSTAMNSFFSNSGTS 660
           +S  SISTS S    +  +F++  +SF+SN  TS
Sbjct: 652 TSSTSISTSSSSTATSSTSFASESSSFYSNVTTS 685


>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 729 RAYVNLSRVFDSYEFVFQQFGNFAHR*TVKPLPLQATFLLSR 604
           R  + L R+FDS +   Q+ G+ + +  VKP+  +  + L+R
Sbjct: 154 RLQIKLERLFDSVDTFRQEQGSKSMQSRVKPMDWKILYGLAR 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,058
Number of Sequences: 5004
Number of extensions: 60390
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)