Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00204
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    32   1.1  
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    32   1.1  
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    32   1.1  
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    32   1.1  
BT022713-1|AAY55129.1|  135|Drosophila melanogaster RE62510p pro...    31   1.5  
AE013599-3438|AAF46881.2|  135|Drosophila melanogaster CG13512-P...    31   1.5  

>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
            homolog protein.
          Length = 3584

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 281  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 397
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2689 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2727


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 281  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 397
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 281  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 397
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
            protein.
          Length = 3583

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 281  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 397
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726


>BT022713-1|AAY55129.1|  135|Drosophila melanogaster RE62510p
           protein.
          Length = 135

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 646 SLPVSEVPELLKNEF-IAVENARQVHICTDCDVEIELNDESHSWNLCRSTSILKCIF 813
           ++PV +   ++ ++  + V+N RQ  IC  C+  I L  E H        + L C+F
Sbjct: 47  TMPVLQPVSVMHHQTTVLVDNTRQGTICPHCNARIRLRVEHHPTGSTYCMAALLCLF 103


>AE013599-3438|AAF46881.2|  135|Drosophila melanogaster CG13512-PA
           protein.
          Length = 135

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 646 SLPVSEVPELLKNEF-IAVENARQVHICTDCDVEIELNDESHSWNLCRSTSILKCIF 813
           ++PV +   ++ ++  + V+N RQ  IC  C+  I L  E H        + L C+F
Sbjct: 47  TMPVLQPVSVMHHQTTVLVDNTRQGTICPHCNARIRLRVEHHPTGSTYCMAALLCLF 103


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,034,213
Number of Sequences: 53049
Number of extensions: 606107
Number of successful extensions: 2186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2186
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)