Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00204
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    29   2.8  
At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...    29   3.8  
At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putati...    29   5.0  
At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putati...    29   5.0  
At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putati...    29   5.0  
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati...    29   5.0  
At4g23690.1 68417.m03410 disease resistance-responsive family pr...    28   6.6  
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    28   6.6  
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s...    28   8.7  
At3g07330.1 68416.m00874 glycosyl transferase family 2 protein s...    28   8.7  
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di...    28   8.7  
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468...    28   8.7  

>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 700 ENARQVHICTDCDVEIELNDESHSWNLCRSTSILKCIFRS 819
           E+A + + C  C+ E+   +  +S N C  T  L+CIF S
Sbjct: 471 EDAEKAYWCEVCEKELNPREWFYSCNKCCITIHLECIFGS 510


>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 382 AENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHP 498
           AE V++  ++  +LT     K +  +KL ++ TK+I+HP
Sbjct: 43  AEEVKEFVQSQVKLTDSVLEKCETKEKLRQNITKLIDHP 81


>At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative strong similarity to
           SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
           (PEPCASE) {Solanum tuberosum}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 968

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 161 TESLTNLIFGS--LLNYFKIILDILEFVRALNINSSTLKHNTSGGAD*ILALP 313
           TE   +++F     + YF++    LE+ R +NI S   K   SGG + + A+P
Sbjct: 722 TEEYRSVVFQEPRFVEYFRLATPELEYGR-MNIGSRPSKRKPSGGIESLRAIP 773


>At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC2) strong similarity to
           phosphoenolpyruvate carboxylase [Brassica napus]
           GI:507808; contains Pfam profile PF00311:
           phosphoenolpyruvate carboxylase
          Length = 793

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 161 TESLTNLIFGS--LLNYFKIILDILEFVRALNINSSTLKHNTSGGAD*ILALP 313
           TE   +++F     + YF++    LE+ R +NI S   K   SGG + + A+P
Sbjct: 718 TEEYRSVVFKEPRFVEYFRLATPELEYGR-MNIGSRPSKRKPSGGIESLRAIP 769


>At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC2) strong similarity to
           phosphoenolpyruvate carboxylase [Brassica napus]
           GI:507808; contains Pfam profile PF00311:
           phosphoenolpyruvate carboxylase
          Length = 793

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 161 TESLTNLIFGS--LLNYFKIILDILEFVRALNINSSTLKHNTSGGAD*ILALP 313
           TE   +++F     + YF++    LE+ R +NI S   K   SGG + + A+P
Sbjct: 718 TEEYRSVVFKEPRFVEYFRLATPELEYGR-MNIGSRPSKRKPSGGIESLRAIP 769


>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC1) strong similarity to
           SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
           (PEPCASE) {Solanum tuberosum}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 967

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 161 TESLTNLIFGS--LLNYFKIILDILEFVRALNINSSTLKHNTSGGAD*ILALP 313
           TE   +++F     + YF++    LE+ R +NI S   K   SGG + + A+P
Sbjct: 721 TEEYRSVVFQEPRFVEYFRLATPELEYGR-MNIGSRPSKRKPSGGIESLRAIP 772


>At4g23690.1 68417.m03410 disease resistance-responsive family
           protein / dirigent family protein similar to disease
           resistance response protein 206-d [Pisum sativum]
           gi|508844|gb|AAB18669; similar to dirigent protein
           [Forsythia x intermedia] gi|6694693|gb|AAF25357
          Length = 187

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 424 TVLSFRKLDDVKKLAKHFT 480
           TVLSFRK  D KK  KHF+
Sbjct: 26  TVLSFRKTIDQKKPCKHFS 44


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 700 ENARQVHICTDCDVEIELNDESHSWNLCRSTSILKCIF 813
           E A  ++ C  C+ E+   D  ++ N+C  T  L CIF
Sbjct: 601 EQADDMYWCEICEKEVNPADWFYTCNICCITIHLHCIF 638


>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 673

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 102 RCNYIFIFFFLKNLIVFFYS 161
           + N IF+FF L+ LI+ FYS
Sbjct: 456 KANLIFLFFLLRKLILPFYS 475


>At3g07330.1 68416.m00874 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 682

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 102 RCNYIFIFFFLKNLIVFFYS 161
           + N IF+FF L+ LI+ FYS
Sbjct: 478 KANMIFLFFLLRKLILPFYS 497


>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 87  LDFVHFNVDCWCNFNVRAWYDRMLV 13
           LDFVH   D W  ++ + WY  +LV
Sbjct: 161 LDFVHGWNDTWVGYDEQFWYAALLV 185


>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF02810: SEC-C motif
          Length = 862

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 244 CPYKLQNVQNNFEIIK*TPKNE 179
           C  KLQ + N+ E+IK  PK+E
Sbjct: 466 CLMKLQQISNHLELIKPNPKDE 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,886
Number of Sequences: 28952
Number of extensions: 293326
Number of successful extensions: 909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)