Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00203
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   4.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   6.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.1  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 114 GLIDILSSCAVCLNAFQ*MLA 52
           GLID  + C V LN +Q  LA
Sbjct: 15  GLIDWYTVCLVPLNPYQFFLA 35


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 69  KRSNKPHRN*ECQLSLKHLREAPTADTFGNLVSRR 173
           K SN+PH+     +   H+ +    D +G L + R
Sbjct: 179 KSSNRPHQGPLTPILYDHIGDLVCVDFYGPLPTGR 213


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 480 LSPAGVIAKSPHRSPFPTVAHLNGEWQIVSV 572
           LSP+G        SP+P    L+G   + S+
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSI 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,493
Number of Sequences: 336
Number of extensions: 3724
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)