Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00203
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827...    73   2e-13
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           60   1e-09
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    31   1.0  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.7  
08_02_0707 - 20212190-20214592                                         30   1.7  
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    29   3.1  
08_02_1474 - 27365548-27366054                                         28   9.3  

>08_02_1223 -
           25381462-25381575,25381822-25382061,25382570-25382707,
           25383397-25383849,25384528-25385010
          Length = 475

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
 Frame = +2

Query: 2   YEFEQK----DPYTTP--TQLDDANIYWKAFKQTAQELRMSI-KPQTFTGGTDSRYLREL 160
           +EF+QK    D +  P  T  D +N++W  F++  +     + KP+ F   TD+RY R L
Sbjct: 357 FEFKQKTSVLDNFGKPAVTPADSSNVWWALFEEAVKRAGGKLGKPEIFPASTDARYFRVL 416

Query: 161 GIPALGFSPIHNTTPALHEHNEHLGLDVFI 250
           GIPA GFSP+ NT   LH+HNE L  D ++
Sbjct: 417 GIPAFGFSPMTNTPILLHDHNEFLSKDEYL 446


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = +2

Query: 56  NIYWKAFKQTAQELRMSIKPQTFTGGTDSRYLRELGIPALGFSPIHNTTPALHEHNE--H 229
           N+ +KA      +L    KP+  +  TDSR++R+LGIPALGFSP+ NT   LH++NE  H
Sbjct: 336 NLTYKAIISAGGKLA---KPEILSSTTDSRFIRQLGIPALGFSPMTNTPILLHDNNEVNH 392

Query: 230 LGLDVF 247
           LGL +F
Sbjct: 393 LGLLLF 398


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 540 AQLLGRAIGAGSSLLRQLAKGGCAARRL 457
           A L G A G G  L RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 393 ITIHWPSFYNVV-TGKTLALPNLIALQH 473
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 444 ALPNLIALQHIPLS---PAGVIAKSPHRSPFPTVAHLNGEWQIVSVNILLKFA 593
           +LP L+AL    +S   P    A + H  PFP V HL     +++V +LL+FA
Sbjct: 75  SLPPLLALLSAAVSLLLPPFSAAAAAHH-PFPAVTHLLRPAALLAVTLLLRFA 126


>06_02_0200 -
           12946139-12946282,12947636-12947842,12949506-12949629,
           12950167-12950369,12950922-12951620,12951723-12951784,
           12952395-12952404,12954905-12957631
          Length = 1391

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 240 SKPRCSLCSCSAGVVLCIGEKPSAGIPSSRRYRLSVPP 127
           S P C L SC+AGV+       SA        R S+PP
Sbjct: 72  SSPPCLLASCAAGVLSLFSSSASASASLRCLRRRSLPP 109


>08_02_1474 - 27365548-27366054
          Length = 168

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 552 RHSGAQLLGRAIGAGSSLLRQLAKGGCAARRLSWVTPGF 436
           R  GA   G A+G G+++  + A+GGCA+    W   G+
Sbjct: 97  RSGGAAGGGAAVGRGAAVGGRGARGGCASGGGGWRLKGW 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,517,599
Number of Sequences: 37544
Number of extensions: 432392
Number of successful extensions: 1128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)