Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00203
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 312 SSKELDISYSSYDALVHRYS 253
           S+   D+S   Y++LVH Y+
Sbjct: 239 SANRTDLSKDDYESLVHLYT 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -1

Query: 225 SLCSCSAGVVLCIGEKPSAGIPSSRRYRLSVPP 127
           +L +  +G   C+   P+A +  + + ++ VPP
Sbjct: 678 NLAAEHSGDYTCVAANPAAEVRYTAKLQVKVPP 710


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   YEFEQKDPYTTPTQLDDA 55
           Y+   +DP  TP Q DD+
Sbjct: 408 YQTMSRDPARTPFQWDDS 425


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 736 ESTFFNSGLLFQTGTTLNPI 677
           E  +  SG L+   TT+NPI
Sbjct: 307 EWLYILSGCLYYFSTTINPI 326


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   YEFEQKDPYTTPTQLDDA 55
           Y+   +DP  TP Q DD+
Sbjct: 408 YQTMSRDPARTPFQWDDS 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,706
Number of Sequences: 438
Number of extensions: 4514
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)