Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00202
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546...    28   7.4  
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    28   9.8  
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301     28   9.8  

>09_04_0637 -
           19153136-19153513,19153607-19153759,19153857-19154675,
           19155068-19155174,19155434-19155548
          Length = 523

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 754 NYKTVIVNSSCKLVFLLLSEKKKVFIKNMMTVLIFWTF 641
           N +T+ V S C++V   +   K +++K++   L  WTF
Sbjct: 336 NVETLAVASHCEMVDTPMLPTKLLYLKHLTISLFAWTF 373


>08_02_0501 +
           17836948-17837373,17837857-17839184,17839270-17839380,
           17839719-17839998,17840275-17840396,17840451-17840556,
           17840814-17841020,17841130-17841255,17841719-17841817,
           17842265-17842456,17842555-17843073
          Length = 1171

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 564 NFWLTFHFH--KFPTSVLQAHSRDSKLSNVQNINTVIIF 674
           +F  T H++  ++P S  Q   RDSKL N   I  ++IF
Sbjct: 247 SFLGTLHYNGQQYPLSPQQILLRDSKLRNTNQIYGIVIF 285


>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
          Length = 272

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 510 WAALKPPCFVAR*RHSGTNFWLTFHFHK 593
           +AA  PP FV+   ++ T+F L F F+K
Sbjct: 149 YAARSPPVFVSNSSYTVTSFTLVFEFNK 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,749,013
Number of Sequences: 37544
Number of extensions: 308928
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)