Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00202
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase fa...    30   2.0  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    28   6.2  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    28   8.2  
At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase fa...    28   8.2  

>At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1)
           (Chromaffin granule ATPase) from {Homo sapiens}
           SP|Q9Y2Q0, {Mus musculus} SP|P98200, {Bos taurus}
           SP|Q29449; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase; ESTs gb|T45045 and
           gb|AA394473 come from this gene
          Length = 1203

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 576 TFHFH--KFPTSVLQAHSRDSKLSNVQNINTVIIF 674
           T HF   + P S+ Q   RDSKL N + I  V++F
Sbjct: 241 TLHFEEQRLPLSITQLLLRDSKLRNTEYIYGVVVF 275


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
           identical to ubiquitin-protein ligase 2 [Arabidopsis
           thaliana] GI:7108523; E3, HECT-domain protein family;
           similar to ubiquitin-protein ligase 2 GI:7108523 from
           [Arabidopsis thaliana]
          Length = 3658

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 713 IFTFIRKKKSFYQEYDDSVDILDI*QFRISRMCLKH*SRKLMEMKRQPKIRATVTSSGHK 534
           + +F   +  F  E    V   D    +I  +CL+       +  RQP +   VTS GH+
Sbjct: 286 VVSFFNGEPEFVNELVTLVSYEDTVPAKIRILCLQSLVALSQDRTRQPTVLTAVTSGGHR 345


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
            domain-containing protein similar to eukaryotic protein
            synthesis initiation factor [Homo sapiens] GI:3941724;
            contains Pfam profiles PF02854: MIF4G domain, PF02847:
            MA3 domain
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -1

Query: 128  VTHYRSAPQGRCTALPHRTQILNLSR 51
            VTH RS+PQ R TA  HR +  +LSR
Sbjct: 1298 VTHGRSSPQERGTAYVHR-EFASLSR 1322


>At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P98200, SP|P70704], {Bos taurus} SP|Q29449;
           contains InterPro accession IPR005834: Haloacid
           dehalogenase-like hydrolase
          Length = 1202

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 573 LTFHFHKFPTSVLQAHSRDSKLSNVQNINTVIIF 674
           L     +FP S+ Q   RDSKL N + +   ++F
Sbjct: 244 LALEEERFPLSIQQILLRDSKLRNTEYVYGAVVF 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,881
Number of Sequences: 28952
Number of extensions: 270789
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)