Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00197
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 113 2e-26
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 113 2e-26
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.017
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 2.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 4.4
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.8
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 25 5.8
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 113 bits (272), Expect = 2e-26
Identities = 51/67 (76%), Positives = 60/67 (89%)
Frame = +1
Query: 61 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 240
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 241 EEEVEKL 261
EE+E++
Sbjct: 61 TEELERI 67
Score = 111 bits (268), Expect = 5e-26
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +3
Query: 255 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH
Sbjct: 66 RIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRH 125
Query: 435 YWGLRVRGQH 464
LRVRGQH
Sbjct: 126 ALDLRVRGQH 135
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 113 bits (272), Expect = 2e-26
Identities = 51/67 (76%), Positives = 60/67 (89%)
Frame = +1
Query: 61 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 240
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 241 EEEVEKL 261
EE+E++
Sbjct: 61 TEELERI 67
Score = 111 bits (268), Expect = 5e-26
Identities = 50/70 (71%), Positives = 59/70 (84%)
Frame = +3
Query: 255 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH
Sbjct: 66 RIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRH 125
Query: 435 YWGLRVRGQH 464
LRVRGQH
Sbjct: 126 ALDLRVRGQH 135
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 33.9 bits (74), Expect = 0.017
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 387 DLERLKKIRAHRGMRHYWGLRVRGQH 464
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 109 NTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKLSLSCRILGS 288
NTN ++V T G ++ S LKK D+ + +CT ++ + + L S
Sbjct: 658 NTNAKASKRVYITFT---GYDKKPSIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCS 714
Query: 289 IRY 297
I Y
Sbjct: 715 IPY 717
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 347 AVFTINNILLPI*EPVWYLILPRIRHD-SDNFSTSSS 240
+++ N+L P P YL P+ R SDN S+SSS
Sbjct: 420 SIYQFANLLSPADTPDSYLAAPKERLSISDNMSSSSS 456
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 390 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 289
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 124 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 216
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 287 LPRIRHDSDNFSTSSSVHSPARLS 216
LP + +N STSSS SPA L+
Sbjct: 339 LPALSDVDENISTSSSPRSPASLA 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,017
Number of Sequences: 5004
Number of extensions: 44051
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -