Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00197
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 122 2e-28
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 122 2e-28
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 122 2e-28
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 4e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.007
03_01_0404 + 3138624-3140096 31 0.63
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.6
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.6
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 4.5
04_04_1097 - 30859963-30860302,30862130-30863058 28 4.5
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 28 5.9
03_01_0646 + 4742398-4742994,4743681-4744085 27 7.8
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 122 bits (294), Expect = 2e-28
Identities = 49/70 (70%), Positives = 64/70 (91%)
Frame = +3
Query: 255 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 62 RLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRH 121
Query: 435 YWGLRVRGQH 464
YWGLRVRGQH
Sbjct: 122 YWGLRVRGQH 131
Score = 100 bits (239), Expect = 9e-22
Identities = 42/61 (68%), Positives = 56/61 (91%)
Frame = +1
Query: 79 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 258
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 259 L 261
L
Sbjct: 63 L 63
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 122 bits (294), Expect = 2e-28
Identities = 49/70 (70%), Positives = 64/70 (91%)
Frame = +3
Query: 255 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 82 RLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRH 141
Query: 435 YWGLRVRGQH 464
YWGLRVRGQH
Sbjct: 142 YWGLRVRGQH 151
Score = 92.7 bits (220), Expect = 2e-19
Identities = 39/57 (68%), Positives = 52/57 (91%)
Frame = +1
Query: 61 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 231
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR+G
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSG 57
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 122 bits (294), Expect = 2e-28
Identities = 49/70 (70%), Positives = 64/70 (91%)
Frame = +3
Query: 255 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 84 RLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRH 143
Query: 435 YWGLRVRGQH 464
YWGLRVRGQH
Sbjct: 144 YWGLRVRGQH 153
Score = 92.7 bits (220), Expect = 2e-19
Identities = 47/115 (40%), Positives = 71/115 (61%)
Frame = +1
Query: 61 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 240
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 241 EEEVEKLSLSCRILGSIRYQTGS*IGKRILLMVNTAS*PPPTWIQNSVKIWRGSR 405
++S+ ++G T + + + ++ N P W N K ++ R
Sbjct: 61 PPSRRQISV---MVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGR 112
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = +3
Query: 303 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 464
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +3
Query: 381 REDLERLKKIRAHRGMRHYWGLRVRGQ 461
R +ERLK+IR +RG+RH GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 333 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 431
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 394 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 504
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 391 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 498
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 206 SAFLRTMLEYLRPTPLIAVIANITL 132
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = -2
Query: 362 GGGQLAVFTINNILLPI*EPVWYLILPRIR-HDSDNFSTSSSVHSPARLSRSMS--AFLR 192
GGG +A+ N+ + L P +R H + N+S S+ P R+S ++S A R
Sbjct: 57 GGGSVAMSVDNSSVGSSDSHTRMLNHPGLRGHVAANYSVGHSIFRPGRVSHALSEDALAR 116
Query: 191 TMLEYLRPTPLIAVIANITLRLPSMFVFM 105
+++ PT + T+ L + + M
Sbjct: 117 ALMDPRYPTETLKDYEEWTIDLGKLHMGM 145
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 27 LVDPPRLQLNQNVAGHSRQISTYS 98
L PP L + N+AGHS + TY+
Sbjct: 328 LGQPPTLGILSNIAGHSSPVRTYT 351
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 144 CDDGYQRCWPEVLQHCSQKSR 206
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,211
Number of Sequences: 37544
Number of extensions: 310902
Number of successful extensions: 893
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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