Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00197
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 6e-32
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 29 2.6
SB_21689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 4.6
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_1556| Best HMM Match : Toxin_19 (HMM E-Value=6.8) 28 4.6
SB_57135| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_23941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 8.0
SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_15611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 134 bits (323), Expect = 6e-32
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = +3
Query: 255 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+++TIM NPRQYKIPDWFLNRQKD DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RH
Sbjct: 66 RVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRH 125
Query: 435 YWGLRVRGQH 464
YWGLRVRGQH
Sbjct: 126 YWGLRVRGQH 135
Score = 119 bits (287), Expect = 1e-27
Identities = 53/67 (79%), Positives = 65/67 (97%)
Frame = +1
Query: 61 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 240
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60
Query: 241 EEEVEKL 261
E+EVE++
Sbjct: 61 EDEVERV 67
>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/34 (82%), Positives = 34/34 (100%)
Frame = +1
Query: 61 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 162
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 261 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
+ + +PR K PD LN KD +GK T+ + ++L D ++ K R+H
Sbjct: 652 VCVHLDPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKNARSH 703
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 431 SHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTIN-NILLPI*EPVWYLILPRIRHDSDNF 255
+HPSVS +L + + T + V GQ + + ++ + + + VWY P + D +F
Sbjct: 874 THPSVSVSLGQSIWYHTHLSVSVSLGQSIWYNTHLSVSVSLCQSVWYHTHPSVLQDVLDF 933
Query: 254 STSSSVHSPARLSRS 210
+ ++ + S+S
Sbjct: 934 YLALALCHTVQASKS 948
>SB_21689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 123 IDVRIHDTKNMLKFVWNDQRHFG*VAAAGDPLVLERRHPR 4
+ +R DT +F +D + GDPLVLER PR
Sbjct: 96 VRLRGRDTTFQRRFTASDTNEVSNSCSPGDPLVLERPPPR 135
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -2
Query: 269 DSDNFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 141
+ T +++HS + ++++ F+ + +E RPT L ++ N
Sbjct: 820 NESEMQTDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 291 KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 431
K+ W L+ V+ KY + S + + + LRE+LE +KK+R G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799
>SB_1556| Best HMM Match : Toxin_19 (HMM E-Value=6.8)
Length = 99
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 302 VWYLILPRIRHDSDNFSTSSSVHSPARLSRSMSAFLRTML 183
VW + P+ HDS F + + SP L R S FLR L
Sbjct: 57 VWCMTGPKATHDSAGFRLNLGLFSPLMLQR--SPFLRLPL 94
>SB_57135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 123 IDVRIHDTKNMLKFVWNDQRHFG*VAAAGDPLVLERRHPR 4
I I T + F+ N + H G GDPLVLER PR
Sbjct: 287 IITHITTTSTIAIFIINRRVHKG-CTGPGDPLVLERPPPR 325
>SB_23941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 75 NDQRHFG*VAAAGDPLVLERRHPR 4
N+ RH + GDPLVLER PR
Sbjct: 2 NNVRHTSNSCSPGDPLVLERPPPR 25
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 309 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 404
L R+K + + KY + +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903
>SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 90 LKFVWND-QRHFG*VAAAGDPLVLERRHPR 4
L+F W D R + GDPLVLER PR
Sbjct: 173 LQFSWIDWTRRVSNSCSPGDPLVLERPPPR 202
>SB_15611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 93 MLKFVWNDQRH-FG*VAAAGDPLVLERRHPR 4
M K W D +H + GDPLVLER PR
Sbjct: 1 MYKCKWFDIKHDISNSCSPGDPLVLERPPPR 31
>SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 123 IDVRIHDTKNMLKF-VWNDQRHFG*VAAAGDPLVLERRHPR 4
++ H ++N+++ + + H + GDPLVLER PR
Sbjct: 3 VECHAHASRNLIESPICDCHAHVSNSCSPGDPLVLERPPPR 43
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +3
Query: 348 QLTSS--NLDSKLREDLERLKKI 410
QLTS N+D K+RE LE++KK+
Sbjct: 72 QLTSEEDNVDPKIREGLEKIKKL 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,322,615
Number of Sequences: 59808
Number of extensions: 341843
Number of successful extensions: 3191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3191
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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