Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00196
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    29   0.59 
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   3.2  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   4.2  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
 Frame = +3

Query: 3   GKMIKKIQADTGCRVQF------------NQEHDEEPGDKLCYLQGKPHQLDQARQMIED 146
           G  +K IQ +T  RVQ             N+E DE     LC +   P+ + +A+ + ED
Sbjct: 314 GAYVKHIQQETRTRVQIKGQGSAFIEPSTNRESDEPI--HLCIMSHDPNAIQRAKVLCED 371

Query: 147 LISSV 161
           LI+SV
Sbjct: 372 LIASV 376


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 55  LNWTLHPVSACIFFI 11
           L W L P+ ACIFFI
Sbjct: 495 LFWRLQPLEACIFFI 509


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 77 WFLIMLLIELDPTSGVRLYLLYHF 6
          WFL+++++E+  T     Y+ +HF
Sbjct: 23 WFLLIIIVEVTITLSFEGYVFHHF 46


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 373 FAVGSGLSVYLLYDGTTSANDQAALGSVDGEGDAHLWSVGDCCP 242
           FA G+G+ +YL   G + +   A LG V G   + + ++G C P
Sbjct: 188 FATGAGIGLYLTIIGLSPS---AGLG-VIGHSSSDIVALGGCPP 227


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 311  VIGRRGAIIKQINAQSGAHCELDRRCQSNDRNTRTFIIRGHPEAVETCTRIIMEKV 478
            +IGR G+  + I  ++     +       +  T T  I G PE  E    +I EKV
Sbjct: 1053 IIGRMGSTRRDIERKTSTMLNIPNVLDPEE--TVTITIVGSPENCEKAKEMIQEKV 1106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,936
Number of Sequences: 5004
Number of extensions: 37171
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)