Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00196
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 38 0.009
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 35 0.066
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 34 0.087
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 31 0.61
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 31 0.81
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 31 1.1
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 31 1.1
03_06_0436 - 33910321-33910851 29 2.5
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 KCGLVIGRRGAIIKQINAQSGAHCE-LDRRCQSNDRNT-RTFIIRGHPEAVETCTRIIME 472
K GLVIG+ G IK + A+SGA + + D T RT I G E +ET ++++E
Sbjct: 268 KVGLVIGKGGETIKSMQAKSGARIQVVPLHLPPGDPATERTVYIDGTQEQIETAKQLVIE 327
Score = 34.7 bits (76), Expect = 0.066
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 278 TFTIHGPKCGLVIGRRGAIIKQINAQSGAHCELDRRCQS-NDRNTRTFIIRGHPEAVETC 454
T I + G++IG+ G IK + QSGA ++ R + TR + G P+ +
Sbjct: 167 TIEIPNGRVGVIIGKSGETIKNLQLQSGAKIQVTRDLDALPGSQTRPVELSGTPDQISRA 226
Query: 455 TRIIME 472
++I E
Sbjct: 227 EQLINE 232
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 34.7 bits (76), Expect = 0.066
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 281 FTIHGPKCGLVIGRRGAIIKQINAQSGAHCELDRRCQ-SNDRNTRTFIIRGHPEAVETCT 457
F + G +IG+ G+ I + +QSGA +L R + N R ++ G + V
Sbjct: 63 FLVSNTAAGCIIGKGGSTINEFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVIKAM 122
Query: 458 RIIMEKV 478
+I+EK+
Sbjct: 123 ELILEKL 129
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 275 VTFTIHGPKCGLVIGRRGAIIKQINAQSGAHCEL-DRRCQSNDRNTRTFIIRGHPEAVET 451
+T I G V+GR G I +I SGA ++ DR + R I G EA++
Sbjct: 287 LTIGIADEHIGAVVGRAGRNITEIIQASGARIKISDRGDFIAGTSERKVTITGTSEAIQA 346
Query: 452 CTRIIMEKV 478
+IM++V
Sbjct: 347 AESMIMQRV 355
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 3 GKMIKKIQADTGCRVQFNQEHDEEPG--DKLCYLQGKPHQLDQARQMI-EDLISSVKRCE 173
G I + Q+ +G R+Q ++ H+ PG D++ + G ++ +A ++I E L++ +
Sbjct: 78 GSTINEFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVIKAMELILEKLLAEGEESN 137
Query: 174 E 176
E
Sbjct: 138 E 138
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 34.3 bits (75), Expect = 0.087
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +2
Query: 299 KCGLVIGRRGAIIKQINAQSGAHCELDRRCQSNDRNTRTFIIRGHPEAVETCTRIIMEKV 478
K GLVIG+ G IK I +SGA ++D NDR I + EA + +E V
Sbjct: 325 KIGLVIGKGGVTIKSIRKESGARIDVDD--SKNDREESIITITSN-EATDDAKSAAVEAV 381
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 3 GKMIKKIQADTGCRVQFNQEHDEEPGDKLCYLQGKP 110
G +K+++A TGCRV + + DK L+GKP
Sbjct: 164 GNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKGKP 199
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 299 KCGLVIGRRGAIIKQINAQSGAHCELDRRCQSN-DRNTRTFIIRGHPEAVETCTRII 466
K G++IG+ G I+ + SGA ++ + +++ + TR+ + G E+++ R+I
Sbjct: 162 KVGVLIGKSGETIRNLQMNSGAKIQITKDAEADANAPTRSVELVGTLESIDKAERLI 218
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 KCGLVIGRRGAIIKQINAQSGAHCEL--DRRCQSNDRNTRTFIIRGHPEAVETCTRIIME 472
K GL+IG+ G IK + +SGA +L + RT I G+ + +E +I +
Sbjct: 256 KVGLIIGKGGETIKTLQTRSGARIQLIPQHPPEGVTLTERTVRITGNKKQIEAAKDMIKQ 315
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 196 YAVRASRTATGAAWSTDSSRRPTRDARHLHHPRTQVRPGHW 318
Y++ AT A W+ D RDA LH + RPG W
Sbjct: 598 YSLGLKGNATVAVWTFDGIDVTRRDAMILHRAQFLERPGFW 638
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 305 GLVIGRRGAIIKQINAQSGAHCELDRRCQSND 400
G VIG+ G IIKQI +SGA ++D +D
Sbjct: 292 GGVIGKGGGIIKQIRQESGAFIKVDSSNTEDD 323
>03_06_0436 - 33910321-33910851
Length = 176
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 318 PMTRPHLGPWMVKVTRISGRSATAVRTPCRPCRRSAG 208
P TRP L R S +AT+ P RP RRS G
Sbjct: 139 PATRPRLATTAATSWRESRAAATSSSPPLRPQRRSCG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,904
Number of Sequences: 37544
Number of extensions: 291714
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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