Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00196
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        41   8e-04
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)                   33   0.27 
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        31   0.63 
SB_37643| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4)                     29   3.4  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   5.9  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_43| Best HMM Match : Motile_Sperm (HMM E-Value=0.61)                28   7.7  

>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
 Frame = +2

Query: 188 PCSTRSGPAERRQGRHGVRTAVADRPEMR-VTFTIHGPKCGLVIGRRGAIIKQINAQSGA 364
           P S  S    R++G    R   A+ P +  +   + G KCGL+IG+ G  IKQI A SGA
Sbjct: 298 PVSLSSQWLSRQRGGPPPRGPPANMPGINTLEMPVPGNKCGLIIGKGGETIKQIIAVSGA 357

Query: 365 HCELDRRCQSNDRNTRTFIIRGHPEAVETCTRIIMEKV 478
           H EL+R    N+  T+ F+IRG  + ++   ++I EK+
Sbjct: 358 HVELNRNVPENN-PTKFFVIRGTDQQIQQAEKMINEKI 394



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   GKMIKKIQADTGCRVQFNQEHDE-EPGDKLCYLQGKPHQLDQARQMIEDLISSVKRCEED 179
           G+ IK+IQA++G RVQFN   D     D++  +QG   Q+ +  ++I ++IS V+ C   
Sbjct: 232 GETIKRIQAESGARVQFNPAKDNPNSSDRMATVQGSQEQIQKVEKIINEIISQVEVCSSY 291

Query: 180 S 182
           S
Sbjct: 292 S 292



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 305 GLVIGRRGAIIKQINAQSGAHCELDRRCQSNDRNTRTFIIRGHPEAVETCTRIIME 472
           G VIG+ G  IK+I A+SGA  + +    + + + R   ++G  E ++   +II E
Sbjct: 225 GFVIGKGGETIKRIQAESGARVQFNPAKDNPNSSDRMATVQGSQEQIQKVEKIINE 280


>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +2

Query: 221 RQGRHGVRTAVA---DRPEMR-VTFTIHGPKCGLVIGRRGAIIKQINAQSGAHCELDRRC 388
           RQ   G++ +++   DR   + +   +     G++IG+ G+ IK I+ Q+GA  ++ ++ 
Sbjct: 83  RQEPQGIKASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKD 142

Query: 389 QSNDRNTRTFIIRGHPEAVETCTRIIMEKV 478
             +    R   + G PE V     II  KV
Sbjct: 143 AESVAGERIVCVGGSPEQVTAACVIITSKV 172


>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
          Length = 379

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 263 PEMRVTFTIHGPKCGLVIGRRGAIIKQINAQSGA 364
           P + +   + G +CG +IG+ GA IK+I   SGA
Sbjct: 87  PPVTLRLIVPGSQCGSIIGKGGAKIKEIREVSGA 120



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 278 TFTIHGPKCGLVIGRRGAIIKQINAQSGAHCELDRRCQSNDRNTRTFIIRGHPEAV 445
           T TI     G +IG++G+ I  I   SGA  ++      +D+  R  +I G  EAV
Sbjct: 195 TMTILKGAVGSIIGQKGSYITGIRQMSGASIKIGDSENGDDK--REVLITGTAEAV 248


>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
 Frame = +2

Query: 161 QKM*GGQSEPC-----STRSGPAERR-QGRHGVRTAVADRP---EMRVTFTIHGPKCGLV 313
           + M GGQS P        ++G A+ + +G  G     AD     E+ +   IH    G +
Sbjct: 23  ENMAGGQSPPGHDDGREAKNGGAKHKPRGARGRPMKEADYSISNEVEMRLVIHDSHAGRI 82

Query: 314 IGRRGAIIKQINAQSGAHCELDRRCQSNDRNTRTFIIRGH--PEAVETCTRIIMEK 475
           IGR+G  +K +  ++GA   +  R  SN+ +    +  GH  P  +    RI++ K
Sbjct: 83  IGRKGNNLKSVMDETGA-SSIKVRFFSNNVDV---VCSGHNLPTTLPRAVRILINK 134


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 3   GKMIKKIQADTGCRVQFNQEHDEEPGDKLCYLQGKPHQLDQARQMIEDLISSV--KRCEE 176
           G  I+K++ +TG R+ F    DE+   +L  + GK   ++ A+  +   I  +  K C E
Sbjct: 753 GASIRKVRENTGARIVFPAAKDED--KELITIIGKQEAVEAAKDELLKSIKDLGAKECVE 810

Query: 177 DSRSRAV 197
            +R R +
Sbjct: 811 GARQRVM 817


>SB_37643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 288 MVKVTRISGRSATAVRTPCRPCRRSAGPDRVLHGSDCPPHIF*H*I*DLRSSDELDLADG 109
           +V++ +++ RS T + TP R C+       +++G    P I  + I D+  S+  + +DG
Sbjct: 18  LVRLWKLTLRSCTVMETPLRSCKVMETHPAIVYGYGNTPAIIRYEISDV-VSEHYETSDG 76

Query: 108 VS 103
           VS
Sbjct: 77  VS 78


>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   GKMIKKIQADTGCRVQF---NQEHDEEPGDKLCYLQGKPHQLDQARQMIEDLI 152
           G  IKK+  DTGC + F   N+    E  +++  + G+P  ++ AR  I +++
Sbjct: 361 GYNIKKVMQDTGCHIHFPDSNRGSSSEKSNQVS-IAGQPLGVESARLHIREML 412


>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 302 CGLVIGRRGAIIKQINAQSGAHCEL 376
           CG +IGR+G  +K I+ QSGA   L
Sbjct: 191 CGRLIGRKGKNVKAISDQSGAKIRL 215


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 573 LHGRQPRRLGVQPGLAPAGRLTGTASTS 656
           L G+QP + G +PGL P G++T TA+T+
Sbjct: 747 LPGQQPGQAGGRPGLNPQGQVT-TATTA 773


>SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4)
          Length = 339

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 247 SSRRPTRDARHLHHPRTQVRPGHWQTWCHHKANKRSVRSPLRTRQE 384
           ++ RP  +  HLHHPR   R         H  +KR    P  +R E
Sbjct: 134 TTERPDSEELHLHHPRDHDRKDTGSHRQQHSESKRVETFPGSSRHE 179


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 209  PAERRQGRH--GVRTAVADRPEMRVTFTIHGPKCGLVIGRRGAIIKQINAQSGAHCELDR 382
            P+ ++  RH  G +  V    +M V+ ++       +IGR G  +  I   +GAH ++D 
Sbjct: 892  PSPKKGKRHEEGWKEVVRRSKKMSVSSSV----VSRIIGRAGCNVNAIRETTGAHIDIDT 947

Query: 383  RCQSNDRNTRTFIIRGHPEAVETCTRIIMEKVGGP 487
              Q +   +    I+G  +A      +I   +  P
Sbjct: 948  SRQKS-TGSCIITIKGPADATRQAHHLISALIKDP 981


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +2

Query: 266  EMRVTFTIHGPKCGLVIGRRGAIIKQINAQSGAHCELDRRCQSNDRNTRTFIIRGHPEAV 445
            +M  T+T H       + R     +Q+N     H +++R C ++ +  RT+ I  H +  
Sbjct: 1474 QMNRTYTTHAK-----MNRTYTTHEQMNRTCTTHAKMNRTCTTHAQMNRTYTI--HAQMN 1526

Query: 446  ETCT 457
             TCT
Sbjct: 1527 RTCT 1530



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 341  QINAQSGAHCELDRRCQSNDRNTRTFIIRGHPEAVETCT 457
            Q+N     H +++R C ++++  RT+I   H +   TCT
Sbjct: 1284 QMNRTGTTHEQMNRTCTTHEQMNRTYIT--HAQMNRTCT 1320


>SB_43| Best HMM Match : Motile_Sperm (HMM E-Value=0.61)
          Length = 662

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 331 GTTSANDQAALGSVDGEGDAHLWSVGDCC 245
           G  S +  +  G +D +G+ H   VGDCC
Sbjct: 598 GCCSDSGCSCEGDIDNDGNFHSDGVGDCC 626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,197
Number of Sequences: 59808
Number of extensions: 332005
Number of successful extensions: 1170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)