Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00196
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.85 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 368 CELDRRCQSNDRNTRTFIIRGHP 436
           C  D  C     N+R F+IRG P
Sbjct: 76  CLEDLDCSLRKLNSRLFVIRGQP 98


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
 Frame = -2

Query: 472 LHNDSCTSL---NCFWV 431
           LHN+ CTSL   N FW+
Sbjct: 24  LHNNMCTSLNLSNLFWL 40


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 308 LVIGRRGAIIKQINAQSGAHCELD 379
           +V+GR GA +  +NA   A  E+D
Sbjct: 367 VVVGRNGAGVGAMNANGEAVGEVD 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,979
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)