Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00195
         (705 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    74   4e-15
EF519513-1|ABP73576.1|  250|Anopheles gambiae APL2 protein.            23   9.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.4  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 74.1 bits (174), Expect = 4e-15
 Identities = 30/51 (58%), Positives = 39/51 (76%)
 Frame = +3

Query: 102 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSIVV 254
           +KDS+D   +L  AGD+LVV+DF ATWCGPCK+I PKL+E   + +D IVV
Sbjct: 5   VKDSEDFNNKLEAAGDQLVVVDFFATWCGPCKVIAPKLEEFQNKYADKIVV 55



 Score = 60.1 bits (139), Expect = 7e-11
 Identities = 24/40 (60%), Positives = 34/40 (85%)
 Frame = +2

Query: 257 KVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 376
           KVDVDECE++A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 57  KVDVDECEELAAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>EF519513-1|ABP73576.1|  250|Anopheles gambiae APL2 protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 571 FFAFQRLQTLKINIFKFITDVKTFFLHLLKTYTCFFFFNSI 449
           FF   RLQTL ++     T   T F  L +  T     NS+
Sbjct: 37  FFGASRLQTLDLSDNAIATIESTAFKRLRELKTLLLXSNSL 77


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 420 LVSIYLCLRIVVLSLSTLAPE 358
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 420 LVSIYLCLRIVVLSLSTLAPE 358
           LVSI +C+ +VVL++   +P+
Sbjct: 316 LVSISICVTVVVLNVHFRSPQ 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,926
Number of Sequences: 2352
Number of extensions: 12572
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)