Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00194
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.29 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.2  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   3.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.3  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 269 KRAASPM-TAASCSTARNMDLSTLGGRFRLRS 361
           +R   P+ T  S S  ++ D+S+   RFRLRS
Sbjct: 34  RRLRRPLKTTQSVSVTKDQDVSSSVNRFRLRS 65


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 314 RNMDLSTLGGRFRLRSSMYNLINTFYS*KK 403
           +N D+ T   +  +   M  +INTFYS K+
Sbjct: 6   QNGDVETFAFQAEIAQLMSLIINTFYSNKE 35


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 310 GTARCSRHWRGGPLHAASQLITFILCETPLL 218
           G   C  H    PL +  +L+TFIL   P L
Sbjct: 35  GCKACGYH---SPLESNHKLVTFILKNPPNL 62


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 141 GGRHRSSRLCAVPSSSSP 194
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 141 GGRHRSSRLCAVPSSSSP 194
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 141 GGRHRSSRLCAVPSSSSP 194
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 141 GGRHRSSRLCAVPSSSSP 194
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 283  ANDGCIVQYRPEHGPLDAW 339
            A +G I  Y+  +GP D W
Sbjct: 1128 AANGVIKGYKVIYGPSDTW 1146


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 168 RAVMTCAFHLSLERTDMMGCPMRTRATVP*GLPNAPRIPVWSLSAPAHDNILLMRI 1
           + V +  FHL++  T ++  P      +         +PV ++S    DNILL  +
Sbjct: 635 QGVRSPTFHLTVRNTSIIKIPFDVFRNM---------LPVRNVSVDVRDNILLKNL 681


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,973
Number of Sequences: 336
Number of extensions: 2157
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)