Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00194
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   130   8e-32
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   130   1e-31
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    27   1.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   3.5  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    24   8.1  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    24   8.1  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  130 bits (314), Expect = 8e-32
 Identities = 60/84 (71%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAK 181
           +RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  I ALRR +
Sbjct: 97  VRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQ 156

Query: 182 FKFPGRQKIYVSKKWGFTKYERDE 253
           +KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 157 YKFPGQQRIIVSKKWGFSQYARDE 180


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  130 bits (313), Expect = 1e-31
 Identities = 60/84 (71%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAK 181
           +RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  I ALRR +
Sbjct: 97  VRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQ 156

Query: 182 FKFPGRQKIYVSKKWGFTKYERDE 253
           +KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 157 YKFPGQQRIIVSKKWGFSQYARDE 180


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 47  QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAKFKFPGRQKIYVSK 220
           +T M    G  +   AR+ IG+ +  +      K     AL++A F  PG+ +I V +
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 88   STLRLAKRTTHPSLEPISSS 29
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156 SSRLCAVPSSSSPDVKRSTYQRSGVS 233
           SS +   P+S SPD+K   YQ  G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 275 AASPMTAASCSTARNMDLSTLGGR 346
           +A P  + + ST  N DLS++GGR
Sbjct: 13  SAPPGHSKAVSTELNKDLSSVGGR 36


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 356 SA*TFLQASRGPCSGRYCTMQPSLARRPSSRSF 258
           SA  F  + RGPC  RY +       RP    F
Sbjct: 6   SATKFTFSKRGPCVFRYLSTLEGTTVRPKKNKF 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,118
Number of Sequences: 5004
Number of extensions: 36044
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)