Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00194
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         81   3e-16
SB_58466| Best HMM Match : DUF624 (HMM E-Value=2.1)                    31   0.38 
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          29   1.5  
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    29   2.0  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   3.5  
SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)                 27   4.6  
SB_1024| Best HMM Match : Ank (HMM E-Value=0)                          27   4.6  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_25504| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-07)                 27   6.1  
SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   27   6.1  
SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05)                  27   6.1  
SB_3338| Best HMM Match : TPX2 (HMM E-Value=3.7)                       27   8.1  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 39/50 (78%), Positives = 42/50 (84%)
 Frame = +2

Query: 56  MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAKFKFPGRQK 205
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  I ALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_58466| Best HMM Match : DUF624 (HMM E-Value=2.1)
          Length = 174

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 325 VHVPGGTA-RCSRHWRGGPLHAASQLITFILCETPLL*YVDLLTSGELELG 176
           +H+PG    + +R +R       S L+ F+LC TPL   + +L   EL LG
Sbjct: 67  IHIPGAQQQKRARRFRSATRIVLSSLLLFVLCATPLYTVLTILKM-ELLLG 116


>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 659

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 26/81 (32%), Positives = 34/81 (41%)
 Frame = -2

Query: 334 RREVHVPGGTARCSRHWRGGPLHAASQLITFILCETPLL*YVDLLTSGELELGTAQSRDD 155
           +R++HV G + +   H  GG L    QL        P   +   L+   LE  TA     
Sbjct: 10  KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPT 68

Query: 154 LCLPPVTRAHGHDGLSNANTC 92
                V  A+  DGLSNAN C
Sbjct: 69  QTSRSVALAY--DGLSNANVC 87


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 214 YVDLLTSGELELGTAQSRDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 59
           Y +  ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 68  YAESCSAGHYVVRTGNPFTDICIPC--QCHGHSDQCDANTGICYVRIYTADLST 119


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 93  HVFALDNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 254
           HV A  +P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 64  CVWQASGYCSTCSHWTTHHV 123
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)
          Length = 340

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 334 RREVHVPGGTA-RCSRHWRGGPLHAASQLITFILCETPL 221
           R  +H+P     + +R +R       S L+ F+LC TPL
Sbjct: 225 RVAIHIPEAQQQKRARRFRSATRMVLSSLLLFVLCATPL 263


>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
          Length = 891

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 336 SVERSMFRAVLHDAAVIGEAALFTQLLNSSRSY 238
           SV+ + +RA LH AAV+G + +   LL  +  Y
Sbjct: 161 SVQDNTYRAPLHWAAVLGNSKIVKILLRKNADY 193


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/70 (18%), Positives = 30/70 (42%)
 Frame = +2

Query: 62   GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAKFKFPGRQKIYVSKKWGFTKY 241
            G  G+P G+V  +      +++++  +W   +  ++  A + FP       S+ W     
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNWPKFNL 1168

Query: 242  ERDELRSCVK 271
             R    +C++
Sbjct: 1169 SRGRGVTCLR 1178


>SB_25504| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-07)
          Length = 326

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 325 VHVPGGTA-RCSRHWRGGPLHAASQLITFILCETPL 221
           +H+P     + +R +R       S L+ F+LC TPL
Sbjct: 229 IHIPEAQQQKRARRFRSATRMVLSSLLLFVLCATPL 264


>SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 218 KKWGFTKYERDELRSCVKRAASPMTAASCSTARNMDLSTLGGR 346
           KK+G     ++  R+  K   S + A S S + N+  ST GGR
Sbjct: 22  KKFGEMHLRKNWARATEKAGKSKLGAVSSSNSANIVKSTTGGR 64


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 236 KYERDELRSCVKRAASPMTAASCSTARNMDLSTLGGRFR 352
           K + D     ++ + SPM  A C         TLGGRFR
Sbjct: 145 KSQFDSYFRTIRYSYSPMDIAVCVVGSLFVFKTLGGRFR 183


>SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05)
          Length = 253

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 325 VHVPGGTA-RCSRHWRGGPLHAASQLITFILCETPL 221
           +H+P     + +R +R       S L+ F+LC TPL
Sbjct: 156 IHIPEAQQQKRARRFRSATRMVLSSLLLFVLCATPL 191


>SB_3338| Best HMM Match : TPX2 (HMM E-Value=3.7)
          Length = 115

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +1

Query: 55  DAWC---VWQASGYCSTCSHWTT 114
           D WC   V + SGY ++C+ W+T
Sbjct: 65  DVWCFRLVQKMSGYLNSCATWST 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,966
Number of Sequences: 59808
Number of extensions: 306964
Number of successful extensions: 876
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)