Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00194
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   118   2e-27
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical...    27   7.1  
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    27   7.1  
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    27   7.1  
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical...    27   7.1  
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    27   7.1  
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    26   9.4  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  118 bits (284), Expect = 2e-27
 Identities = 56/83 (67%), Positives = 65/83 (78%)
 Frame = +2

Query: 5   RINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAKF 184
           RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R  +      I A RRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKF 157

Query: 185 KFPGRQKIYVSKKWGFTKYERDE 253
           KFPGRQ I  S+KWGFTK++R++
Sbjct: 158 KFPGRQIIVSSRKWGFTKWDRED 180



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 256 EKLREEGRLANDGCIVQYRPEHGPLDAW 339
           E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 182 ERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 148 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 26
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 59  RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIT--ALRRAKFKFPGRQK 205
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 78  GLPNAPRIPVWSLSAPA 28
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 141  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 52
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 141  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 52
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 141  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 52
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 141  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 52
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 141  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 52
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 141  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 52
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = -3

Query: 384  VLIRLYIEDLSLNLPPSVERSMFRAVLHDAAVIGEAALFTQLLNSSR 244
            +L R+ ++D+   +PP   R++ R  L DAA++     +T++ N ++
Sbjct: 917  LLERVLMKDVVSPVPPEEVRAVIRKCLEDAALVN----YTRICNEAK 959


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 99  FALDNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 206
           F+LD+P+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,328,716
Number of Sequences: 27780
Number of extensions: 221053
Number of successful extensions: 573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)