Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00194
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   9.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 381 LIRLYIEDLSLNLPPSVERSMFR 313
           LIRL + +LS N+   ++  MF+
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFK 356


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 292 GCIVQYRPEHGPLDAWRKVQAEI 360
           G I  Y PE GP    +K + EI
Sbjct: 197 GAIGAYGPEKGPKVPEKKKEDEI 219


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 138 SLERTDMMGCPMRTRATVP*G 76
           SLER D  GC       +P G
Sbjct: 572 SLERFDFCGCGWPQHMLIPKG 592


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +1

Query: 70  WQASGYCSTCSHWTTH 117
           W A      CSH  TH
Sbjct: 561 WMALKMIQACSHHLTH 576


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,386
Number of Sequences: 438
Number of extensions: 2424
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)