Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00194
(413 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 127 3e-30
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 124 2e-29
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 124 2e-29
At1g79360.1 68414.m09248 transporter-related low similarity to S... 29 1.2
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 2.9
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 5.0
At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO... 27 6.6
At3g23540.1 68416.m02962 expressed protein ; expression supporte... 26 8.7
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 26 8.7
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 26 8.7
At1g07490.1 68414.m00802 expressed protein 26 8.7
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 127 bits (306), Expect = 3e-30
Identities = 61/84 (72%), Positives = 66/84 (78%)
Frame = +2
Query: 2 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAK 181
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D ALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAK 156
Query: 182 FKFPGRQKIYVSKKWGFTKYERDE 253
FKFPGRQKI VS+KWGFTK+ R E
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRAE 180
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 124 bits (300), Expect = 2e-29
Identities = 60/82 (73%), Positives = 65/82 (79%)
Frame = +2
Query: 2 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAK 181
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D ALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
Query: 182 FKFPGRQKIYVSKKWGFTKYER 247
FKFPGRQKI VS+KWGFTK+ R
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNR 178
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 154 GHHGSAP---CQVQVPRTSKDLRIKEVGFHKV*T**VEKLREEGRLANDGCIVQYRPEHG 324
GHH + + P K + ++ GF K KLR+E R+ DG ++ HG
Sbjct: 145 GHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHG 204
Query: 325 PL 330
PL
Sbjct: 205 PL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 124 bits (300), Expect = 2e-29
Identities = 60/82 (73%), Positives = 65/82 (79%)
Frame = +2
Query: 2 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVITALRRAK 181
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D ALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
Query: 182 FKFPGRQKIYVSKKWGFTKYER 247
FKFPGRQKI VS+KWGFTK+ R
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNR 178
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 154 GHHGSAP---CQVQVPRTSKDLRIKEVGFHKV*T**VEKLREEGRLANDGCIVQYRPEHG 324
GHH + + P K + ++ GF K KLR+E R+ DG ++ HG
Sbjct: 145 GHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHG 204
Query: 325 PL 330
PL
Sbjct: 205 PL 206
>At1g79360.1 68414.m09248 transporter-related low similarity to
SP|O76082 Organic cation/carnitine transporter 2 (Solute
carrier family 22, member 5) (High-affinity
sodium-dependent carnitine cotransporter) {Homo
sapiens}; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 527
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 215 SKKWGFTKYERDELRSCVKRAAS-PMTAASCSTARNMDLSTL 337
S +W F + R+E S +KR AS P T S A +M S+L
Sbjct: 254 SPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSL 295
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 294 AVIGEAALFTQLLNSSRSYFVKPHFFDT*IF*RPGNLNLARRRAVMTCAFHLSLERTDMM 115
A+I + F + NSS S+ + FF + F P NLN R + HL + +
Sbjct: 3 ALIASTSFFVPISNSSSSHIINNRFFPS--FYSP-NLNFGTFRKTSLSSSHLVFSSSAIS 59
Query: 114 GCPMRTRAT 88
P T T
Sbjct: 60 APPSSTVLT 68
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 104 CEHVLQYPEACQTHHAS 54
C+ +LQ+P CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277
>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
domain-containing protein contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
similar to Speckle-type POZ protein (SP:O43791) [Homo
sapiens]
Length = 368
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 319 VPGGTARCSRHWRGGPLHAASQLITFILCETPL 221
+PGG +RC R W+ LH+ + C+ PL
Sbjct: 291 IPGGCSRCKRMWQLLELHSRI-CVDSEQCKVPL 322
>At3g23540.1 68416.m02962 expressed protein ; expression supported
by MPSS
Length = 568
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 190 ELELGTAQSRDDLCLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 26
+LE+ + Q ++ PP TR HG NA C S+ + T E S+S+
Sbjct: 435 DLEVQSQQKKE----PPETRIHGGSAFLNAVQCISSREESTSTRANQSETDSASS 485
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 123 PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 230
P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 493 PLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 123 PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 230
P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 493 PLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 156 SSRLCAVPSSSSPDVKRSTYQR 221
SS C+VPSSSS + RS+ ++
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKK 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,776,390
Number of Sequences: 28952
Number of extensions: 205672
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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