Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00193
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   109   3e-25
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   108   6e-25
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.7  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.8  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  109 bits (262), Expect = 3e-25
 Identities = 53/81 (65%), Positives = 63/81 (77%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           E+IIEGNSLE+VS SAA I+Q
Sbjct: 141 EIIIEGNSLENVSQSAANIKQ 161



 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 32/78 (41%), Positives = 52/78 (66%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 202 KKELAAVRTVCSHVENMI 255
           +K  A +RT  S + NMI
Sbjct: 62  RKHNACIRTAYSIINNMI 79



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +2

Query: 509 VKNKDIRKFLDGLYVSEKTTV 571
           V+NKDIRKFLDG+YVSE+  +
Sbjct: 165 VRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  108 bits (260), Expect = 6e-25
 Identities = 52/81 (64%), Positives = 63/81 (77%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
           E+I+EGNSLE+VS SAA I+Q
Sbjct: 141 EIILEGNSLENVSQSAANIKQ 161



 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 202 KKELAAVRTVCSHVENMI 255
           +K  A +R+V S + NMI
Sbjct: 62  RKHNACIRSVYSIINNMI 79



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +2

Query: 509 VKNKDIRKFLDGLYVSEKTTV 571
           V+NKDIRKFLDG+YVSE+  +
Sbjct: 165 VRNKDIRKFLDGIYVSERGNI 185


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 49   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 216
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 217  AVRTVCSHVENMI 255
             + T+CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 231 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 85
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 574 HNSCFLRYIKTIQELSDILILD 509
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 417 NSPKQKDELIIEGNSLEDVSSSAALIQQ 500
           +SPK+K +L ++G  L+ +  + +LI+Q
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQ 276


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 225 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 103
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 215 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 105
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -1

Query: 514  LDVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPK 362
            LDV    M+  E  T +KE           GELT      I + LM FS K
Sbjct: 1048 LDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEK 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,527
Number of Sequences: 5004
Number of extensions: 50832
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)