Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00192
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 108 4e-24
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 108 4e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 108 4e-24
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 108 4e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 108 4e-24
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 108 4e-24
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 107 1e-23
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 107 1e-23
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 107 1e-23
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 56 2e-08
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 56 2e-08
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 56 2e-08
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 56 2e-08
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 56 2e-08
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 56 2e-08
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 27 9.6
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 108 bits (259), Expect = 4e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 108 bits (259), Expect = 4e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 108 bits (259), Expect = 4e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 108 bits (259), Expect = 4e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 108 bits (259), Expect = 4e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 108 bits (259), Expect = 4e-24
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 378 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 427
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 107 bits (256), Expect = 1e-23
Identities = 46/50 (92%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 107 bits (256), Expect = 1e-23
Identities = 46/50 (92%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ
Sbjct: 377 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (256), Expect = 1e-23
Identities = 46/50 (92%), Positives = 50/50 (100%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 151
+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ
Sbjct: 378 MFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 427
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 145
+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 VFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 145
+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 VFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 145
+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 VFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 145
+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 VFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 145
+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 VFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 145
+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 VFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 626 VWRSWQHPNFIHSVQQK*NGTGVRVESALVGI 531
+W PN ++S+QQ N T V V + G+
Sbjct: 338 LWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGV 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,563
Number of Sequences: 28952
Number of extensions: 244551
Number of successful extensions: 522
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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