Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00191
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    56   5e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    44   2e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    41   2e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    38   0.002
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    36   0.008
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    35   0.011
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    29   0.54 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.9  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   8.9  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = +2

Query: 65  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDS 208
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++ +   SD+
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDA 50



 Score = 32.7 bits (71), Expect = 0.058
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 EYNINSMPTFVFVKNGKKLDEFSGAN 333
           E  +++MP+F   KNG+K++E  GAN
Sbjct: 66  EAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +2

Query: 65  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 196
           ++   D  TR++   DK+ V+DF A WCGPCK + P L++++ +
Sbjct: 22  VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKLSEQ 63


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +2

Query: 17  VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 196
           VI  L ++      + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A 
Sbjct: 9   VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67

Query: 197 MSD 205
             D
Sbjct: 68  FED 70



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 113 KLVVIDFMATWCGPCKMIGPKLDEI 187
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 113 KLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 205
           K V+++F A WCG CK + P  +++A E SD
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSD 404



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 110 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM 199
           DK++++ F A WCG CK + P+ +  A E+
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADEL 68



 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 256 EYNINSMPTFVFVKNGKKLDEFSG 327
           EY+I   PT    KNGK++ ++SG
Sbjct: 89  EYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 265 INSMPTFVFVKNGKKLDEFSGAN 333
           + +MPTFVF +NGK++D  +GAN
Sbjct: 72  VKAMPTFVFFENGKQIDMLTGAN 94



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 119 VVIDFMATWCGPCKMIGPKLDEIAAE 196
           + +D  A WCGPCK I P   ++A++
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASK 47


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +2

Query: 53  MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 211
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +  +++
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAV 53



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 259 YNINSMPTFVFVKNGKKLDEFSGAN 333
           +++N++P FV +   K L   SGAN
Sbjct: 69  FDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 71  DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEM 199
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNL 77


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 71  DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 211
           + D +  RL EAG  +     +A  CGPC  +  + D+IA+   ++I
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIASGEPNAI 472


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 499 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 392
           N   ++TD +NIF +F+ N   + F    L  I  C
Sbjct: 76  NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 429 KNMYTFLINEEKMFLTSVMNLK 494
           +N Y +L+NE+  FLTS+  +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,050
Number of Sequences: 5004
Number of extensions: 55300
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)