Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00191
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    29   0.063
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 0.063
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 222 RWTLMSARTSPRVQHQLDADVRLRKEWQETGRILWR*RRQTQNNY 356
           R T++  RT   ++HQ D   +L++ W++   I  R RR+ +  Y
Sbjct: 8   RPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQY 52


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 142 GRHEVDHDELVSGF 101
           G H+VD DEL++G+
Sbjct: 122 GDHDVDKDELITGW 135


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 383 LVSIYLCLRIVVLSLSTLAPE 321
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 383 LVSIYLCLRIVVLSLSTLAPE 321
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 732 TWISIGEIIHLSNSDKNKKKTTIHTLKFLSTPLINKKP 619
           TW+ + E     N    K++   H + F S   + K+P
Sbjct: 442 TWLPVNENYKSLNLAAQKREYYSHYVAFKSLSYLKKQP 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,296
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)